Jobs interrupted
Le pipeline pose un autre problème, les jobs se sont simplement arrêtés sans message d'erreur sur le projet très lourd que je ne parviens toujours pas à traiter
Le projet est localisé ici :
/media/superdisk/edna/working/lengguru/snakemake_rapidrun_obitools
Et les dernières lignes du nohup
sont celles-ci:
[Sat Jun 4 18:27:42 2022]
rule remove_unaligned:
input: results/02_illuminapairedend/180518_SND405_A_L001_AIMI-15.fastq
output: results/03_remove_unaligned/180518_SND405_A_L001_AIMI-15.ali.fastq
log: logs/03_remove_unaligned/180518_SND405_A_L001_AIMI-15.log
jobid: 3896
wildcards: run=180518_SND405_A_L001_AIMI-15
resources: tmpdir=/tmp
Activating conda environment: /media/superdisk/edna/working/lengguru/snakemake_rapidrun_obitools/.snakemake/conda/4d24d54c9f40f55e40baa7b9d8443bfb
[Sun Jun 5 00:35:08 2022]
Finished job 5837.
49 of 9729 steps (1%) done
Select jobs to execute...
[Sun Jun 5 00:35:08 2022]
Job 7618: Assign each sequence record: Other/teleo/180518_SND405_A_L002_AIMI-16
Activating conda environment: /media/superdisk/edna/working/lengguru/snakemake_rapidrun_obitools/.snakemake/conda/4d24d54c9f40f55e40baa7b9d8443bfb
[Sun Jun 5 00:35:08 2022]
Job 5836: Assign each sequence record: Lengguru/teleo/180518_SND405_A_L002_AIMI-16
Activating conda environment: /media/superdisk/edna/working/lengguru/snakemake_rapidrun_obitools/.snakemake/conda/4d24d54c9f40f55e40baa7b9d8443bfb