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edna
snakemake_rapidrun_swarm
Commits
1c58e297
Commit
1c58e297
authored
Jan 31, 2020
by
peguerin
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readme update
parent
ce88f817
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README.md
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@@ -6,7 +6,34 @@ OTU clustering with SWARM on RAPIDRUN data encapsulated in SNAKEMAKE
# Prerequisites
python3
pip3 install pymysql
pandas
biopython
pip install pandas
\ No newline at end of file
snakemake
singularity
pip3 install pandas
pip3 install biopython
# Configuration / input files
You have to set 2 files:
*
[
01_infos/all_samples.tsv
](
01_infos/all_samples.tsv
)
*
[
01_infos/config.yaml
](
01_infos/config_test.yaml
)
# Run the workflow
```
bash main.sh
```
\ No newline at end of file
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