readme update

README.md

@@ -6,7 +6,34 @@ OTU clustering with SWARM on RAPIDRUN data encapsulated in SNAKEMAKE
 # Prerequisites
 
 
+python3
 
-pip3 install pymysql
+pandas
+biopython
 
-pip install pandas
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+
+snakemake
+
+singularity
+
+pip3 install pandas
+
+
+pip3 install biopython
+
+
+
+
+# Configuration / input files
+
+You have to set 2 files:
+
+* [01_infos/all_samples.tsv](01_infos/all_samples.tsv)
+* [01_infos/config.yaml](01_infos/config_test.yaml)
+
+
+# Run the workflow
+
+```
+bash main.sh
+```
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