Commit 1c58e297 authored by peguerin's avatar peguerin
Browse files

readme update

parent ce88f817
......@@ -6,7 +6,34 @@ OTU clustering with SWARM on RAPIDRUN data encapsulated in SNAKEMAKE
# Prerequisites
python3
pip3 install pymysql
pandas
biopython
pip install pandas
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snakemake
singularity
pip3 install pandas
pip3 install biopython
# Configuration / input files
You have to set 2 files:
* [01_infos/all_samples.tsv](01_infos/all_samples.tsv)
* [01_infos/config.yaml](01_infos/config_test.yaml)
# Run the workflow
```
bash main.sh
```
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