@@ -39,6 +39,40 @@ OTU-clustering steps are based on [TARA Fred's metabarcoding pipeline](https://g
6.[Reference]()
7.[Metabarcoding context - discussion to go further]()
## Quick Start
See [Install section](https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_swarm/-/wikis/home#installation) for installation instructions.
Download example data:
```
curl -JLO http://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_data_test/-/raw/master/test_rapidrun_data.tar.gz; tar zfxz test_rapidrun_data.tar.gz -C resources/test/
```
`./resources/test/test_rapidrun_data/`: this folder contains a reference database for 4 markers (Teleo01; Mamm01; Vert01; Chond01), NGS metabarcoding raw data, required metadata to handle demultiplexing on RAPIDRUN format.
If you have installed **eDNA-seq Metabarcoding OTU-clustering**, you can run the example data with:
Now that you've gotten the example to work, see the [wiki](https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_swarm/-/wikis/home) to navigate to the more detailed descriptions and instructions for exploring your own data.
## Credits
**eDNA-seq Metabarcoding OTU-clustering** was coded and written by Virginie Marques and Pierre-Edouard Guerin.