Commit deeeab36 authored by peguerin's avatar peguerin
Browse files

remove old config file

parent 8d34460d
singularity:
ednatools: /media/superdisk/utils/conteneurs/ednatools.simg
obitools: /media/superdisk/utils/conteneurs/obitools.simg
fichiers:
rapidrun: ../resources/all_samples.csv
folder_fastq: /media/superdisk/edna/donnees/test/tiny_malpelo-fakarava_rapidrun/
folder_refdb: /media/superdisk/edna/donnees/reference_database/ref141/
dat:
mamm: ../marqueur/Mamm.dat
teleo: ../marqueur/Teleo.dat
chond: ../marqueur/Chond.dat
vert: ../marqueur/Vert.dat
reference:
mamm:
prefix: embl_std
folder: /media/superdisk/edna/donnees/reference_database/ref141/reference_database_mamm/
fasta: /media/superdisk/edna/donnees/reference_database/ref141/reference_database_mamm/db_embl_std.fasta
teleo:
prefix: embl_std
folder: /media/superdisk/edna/donnees/reference_database/ref141/reference_database_teleo/
fasta: /media/superdisk/edna/donnees/reference_database/ref141/reference_database_teleo/db_embl_std.fasta
chond:
prefix: embl_std
folder: /media/superdisk/edna/donnees/reference_database/ref141/reference_database_chond/
fasta: /media/superdisk/edna/donnees/reference_database/ref141/reference_database_chond/db_embl_std.fasta
vert:
prefix: embl_std
folder: /media/superdisk/edna/donnees/reference_database/ref141/reference_database_vert/
fasta: /media/superdisk/edna/donnees/reference_database/ref141/reference_database_vert/db_embl_std.fasta
blacklist:
projet:
- dummy_run
run:
- dummy_run
- 180430_SN234_A_L001_AIMI-9
- 180504_SND405_A_L001_AIMI-10
- 180504_SND405_A_L002_AIMI-11
merge_fastq:
encoding: 33
merging:
vsearch:
cores: 8
demultiplexing:
maxLen: 120
minLen: 20
clustering:
swarm:
cores: 8
assignment:
ecotag:
minIdentity: 0.0
\ No newline at end of file
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