add rule mv_otu_table

rules/common.smk

@@ -83,6 +83,9 @@ def get_targets():
             rpm = f'results/{pipeline}/{projet}/{marker}/'
             if projet not in config['blacklist']['projet'] and run not in config['blacklist']['run']:
                 tsv = f'{rpm}otu_genbank_ecotag.tsv'
+                table = f'{rpm}table_motu.tsv'
+                if table not in files:
+                    files.append(table)
                 if tsv not in files:
                     files.append(tsv)
                     if config['custom_baseref'] and marker in config['custom_ref']:

rules/table_assigned_sequences.smk

@@ -17,3 +17,17 @@ rule table_assigned_sequences:
         '''
         obitab -o {input} > {output} 2> {log}
         '''
+
+rule mv_otu_table:
+    input:
+        table = rules.otu_table.output,
+        fasta = rules.otu_fasta.output
+    output:
+        Path('results', config['subfolders']['table_assignment'], '{projmark}/table_motu.tsv')
+    log:
+        Path('logs', config['subfolders']['table_assignment'], '{projmark}/table_motu.log')
+    shell:
+        '''
+        mv {input.table} {output}
+        echo 'move {input.table} --> {output}'
+        '''
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