Commit e89b6bff authored by peguerin's avatar peguerin
Browse files

blacklist doc

parent 6120debf
......@@ -2,6 +2,8 @@
All notable changes to this project will be documented in this file.
## [Unreleased]
### Added
- blacklist runs or projects from 'rapidrun' .tsv file
## [1.0.0] - 6th feb 2020
### Added
......
......@@ -61,11 +61,19 @@ From
- `01_infos/config_test.yaml`
* `fichiers:` `rapidrun`
* `fichiers:` `dat`
* `blacklist:`
* :warning: the colon "marker" into `fichiers:` `rapidrun` must be the same name as marker's keys of `fichiers:` `dat` into `01_infos/config_test.yaml`
* This will generate a file `01_infos/all_demultiplex.csv` with each line arguments for each command to run in parallel.
* `blacklist:` `projet:` contains a list of projects you don't want to proceed
* `blacklist:` `run:` contains a list of runs you don't want to proceed
```
snakemake --configfile 01_infos/config_test.yaml -s readwrite_rapidrun_demultiplexing.py
```
......@@ -76,10 +84,15 @@ snakemake --configfile 01_infos/config_test.yaml -s readwrite_rapidrun_demultipl
From
- `01_infos/config_test.yaml`
* `fichiers:` `rapidrun`
* `blacklist:`
* Deduce the `{run}` fastq paired-end to merge
* :warning: guadeloupe have been removed by hand into [02_assembly/Snakefile](02_assembly/Snakefile) !!!
* `blacklist:` `projet:` contains a list of projects you don't want to proceed
* `blacklist:` `run:` contains a list of runs you don't want to proceed
```
......
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