Commit ef3243de authored by peguerin's avatar peguerin
Browse files

changelog update

parent 65cde969
# Changelog # Changelog
All notable changes to this project will be documented in this file. All notable changes to this project will be documented in this file.
## [unreleased] ## [1.1.3]
### Added ### Added
- "spygen origine" format (one single `.dat` file for one single `.fastq` file) can be processed - "spygen origine" format (one single `.dat` file for one single `.fastq` file) can be processed
- UNIT TEST `01_settings/readwrite_rapidrun_demultiplexing.py` barcode_tags_duplicated.csv has exactly 2 columns (original, duplicated) - UNIT TEST `01_settings/readwrite_rapidrun_demultiplexing.py` barcode_tags_duplicated.csv has exactly 2 columns (original, duplicated)
...@@ -9,6 +9,9 @@ All notable changes to this project will be documented in this file. ...@@ -9,6 +9,9 @@ All notable changes to this project will be documented in this file.
- TEST dataset to check in few seconds if the whole workflow works fine on CLASSIC case - TEST dataset to check in few seconds if the whole workflow works fine on CLASSIC case
- copy and rename files generated from 19_otu_table and 24_table_assigned_sequences to results folder - copy and rename files generated from 19_otu_table and 24_table_assigned_sequences to results folder
- resources job: number of parallelized jobs are limited by the resource "job" - resources job: number of parallelized jobs are limited by the resource "job"
- `scripts/prepare_spygen_data.py` generates the all_samples.csv file from SPYGEN "standard" information file and {marker}.dat files
- TEST integrity of `.dat` files
-
### Changed ### Changed
- all worklows are merged into a single one - all worklows are merged into a single one
...@@ -20,6 +23,8 @@ All notable changes to this project will be documented in this file. ...@@ -20,6 +23,8 @@ All notable changes to this project will be documented in this file.
- convert `scripts/scripts/OTU_contingency_table.py` code from python2 into python3 - convert `scripts/scripts/OTU_contingency_table.py` code from python2 into python3
- update cutadapt version 2 to cutadapt version 3.2 - update cutadapt version 2 to cutadapt version 3.2
- Fix SettingWithCopyWarning pandas dataframe - Fix SettingWithCopyWarning pandas dataframe
- factorisation folder results generation
- Fix data export
### Removed ### Removed
- old folders and scripts 01_settings, 02_assembly, 03_demultiplex, etc... - old folders and scripts 01_settings, 02_assembly, 03_demultiplex, etc...
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