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edna
snakemake_rapidrun_swarm
Commits
ef3243de
Commit
ef3243de
authored
Feb 23, 2021
by
peguerin
Browse files
changelog update
parent
65cde969
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CHANGELOG.md
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ef3243de
# Changelog
All notable changes to this project will be documented in this file.
## [
unreleased
]
## [
1.1.3
]
### Added
-
"spygen origine" format (one single
`.dat`
file for one single
`.fastq`
file) can be processed
-
UNIT TEST
`01_settings/readwrite_rapidrun_demultiplexing.py`
barcode_tags_duplicated.csv has exactly 2 columns (original, duplicated)
...
...
@@ -9,6 +9,9 @@ All notable changes to this project will be documented in this file.
-
TEST dataset to check in few seconds if the whole workflow works fine on CLASSIC case
-
copy and rename files generated from 19_otu_table and 24_table_assigned_sequences to results folder
-
resources job: number of parallelized jobs are limited by the resource "job"
-
`scripts/prepare_spygen_data.py`
generates the all_samples.csv file from SPYGEN "standard" information file and {marker}.dat files
-
TEST integrity of
`.dat`
files
-
### Changed
-
all worklows are merged into a single one
...
...
@@ -20,6 +23,8 @@ All notable changes to this project will be documented in this file.
-
convert
`scripts/scripts/OTU_contingency_table.py`
code from python2 into python3
-
update cutadapt version 2 to cutadapt version 3.2
-
Fix SettingWithCopyWarning pandas dataframe
-
factorisation folder results generation
-
Fix data export
### Removed
-
old folders and scripts 01_settings, 02_assembly, 03_demultiplex, etc...
...
...
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