Commit f84dd4f0 authored by peguerin's avatar peguerin
Browse files

readme update

parent 9ae43072
...@@ -55,6 +55,9 @@ The complete data set can be downloaded and stored into [resources/tutorial](htt ...@@ -55,6 +55,9 @@ The complete data set can be downloaded and stored into [resources/tutorial](htt
``` ```
wget -c https://gitlab.mbb.univ-montp2.fr/edna/tutorial_metabarcoding_data/-/raw/master/tutorial_rapidrun_data.tar.gz -O - | tar -xz -C ./resources/tutorial/ wget -c https://gitlab.mbb.univ-montp2.fr/edna/tutorial_metabarcoding_data/-/raw/master/tutorial_rapidrun_data.tar.gz -O - | tar -xz -C ./resources/tutorial/
``` ```
* Data is downloaded at [resources/tutorial](https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_swarm/-/tree/master/resources/tutorial)
* This is a tiny subset of a real metabarcoding analysis in rapidrun format
# Run the workflow # Run the workflow
...@@ -67,7 +70,7 @@ bash main.sh config/config_tutorial.yaml 8 ...@@ -67,7 +70,7 @@ bash main.sh config/config_tutorial.yaml 8
* This will generate OTU occurences tables into [results/06_assignment/04_table](https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_swarm/-/tree/master/results/06_assignment/04_table) * This will generate OTU occurences tables into [results/06_assignment/04_table](https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_swarm/-/tree/master/results/06_assignment/04_table)
* The first argument [config/config_tutorial.yaml](https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_swarm/-/blob/master/config/config_tutorial.yaml) contains mandatory parameters information * The first argument [config/config_tutorial.yaml](https://gitlab.mbb.univ-montp2.fr/edna/snakemake_rapidrun_swarm/-/blob/master/config/config_tutorial.yaml) contains mandatory parameters information
* The second argument **8** is the number of CPU cores you want to allow the system use to run the whole workflow * The second argument **8** is the number of CPU cores you want to allow the system uses to run the whole workflow
# To go further # To go further
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