Commits · 2c00e0851842a332933660e050869b3075c4a132 · edna / snakemake_rapidrun_swarm

23 Feb, 2021 9 commits
- readme update · 2c00e085
  peguerin authored Feb 23, 2021
  
  2c00e085
- readme update · 992b1095
  peguerin authored Feb 23, 2021
  
  992b1095
- add fastqc env conda · 61fc3b8b
  peguerin authored Feb 23, 2021
  
  61fc3b8b
- add fastqc parameter · ea9fbf46
  peguerin authored Feb 23, 2021
  
  ea9fbf46
- add fastqc rule · aedac20f
  peguerin authored Feb 23, 2021
  
  aedac20f
- update changelog · 6d0e4250
  peguerin authored Feb 23, 2021
  
  6d0e4250
- changelog update · 9223b2a9
  peguerin authored Feb 23, 2021
  
  9223b2a9
- changelog update · ef3243de
  peguerin authored Feb 23, 2021
  
  ef3243de
- fix path of results · 65cde969
  peguerin authored Feb 23, 2021
  
  65cde969
22 Feb, 2021 7 commits
- remove config malpelo · 44dd49c4
  peguerin authored Feb 22, 2021
  
  44dd49c4
- remove old config file · deeeab36
  peguerin authored Feb 22, 2021
  
  deeeab36
- handle empty output {projet}{marker} · 8d34460d
  peguerin authored Feb 22, 2021
  
  8d34460d
- factoriser la creation des dossiers · b276542b
  peguerin authored Feb 22, 2021
  
  b276542b
- gitignore update · f86120ac
  peguerin authored Feb 22, 2021
  
  f86120ac
- check dat files integrity · 440525db
  peguerin authored Feb 22, 2021
  
  440525db
- Update prepare_spygen_data.py · 7dae9a42
  vmarques authored Feb 22, 2021
  
  7dae9a42
18 Feb, 2021 3 commits
- script to prepare spygen data · 2db304b7
  peguerin authored Feb 18, 2021
  
  2db304b7
- params cluster · dea33f21
  peguerin authored Feb 18, 2021
  
  dea33f21
- add containers · 2bf57070
  peguerin authored Feb 18, 2021
  
  2bf57070
11 Feb, 2021 1 commit
- fix warnings SettingWithCopyWarning pandas dataframe · e4f4f49e
  peguerin authored Feb 11, 2021
  
  e4f4f49e
01 Feb, 2021 3 commits
- simplify snakemake command · adaba499
  peguerin authored Feb 01, 2021
  
  adaba499
- fix command snakemake · 7b074308
  peguerin authored Feb 01, 2021
  
  7b074308
- fix cutadapt demultiplex · f39ff62c
  vmarques authored Feb 01, 2021
  
  f39ff62c
25 Jan, 2021 1 commit
- gitignore update · b4d74493
  peguerin authored Jan 25, 2021
  
  b4d74493
21 Jan, 2021 2 commits
- gitignore update · 2888a0cf
  peguerin authored Jan 21, 2021
  
  2888a0cf
- gitignore update · 232bb872
  peguerin authored Jan 21, 2021
  
  232bb872
20 Jan, 2021 5 commits
- changelog update · 731b687a
  peguerin authored Jan 20, 2021
  
  731b687a
- changelog update · dd28f20f
  peguerin authored Jan 20, 2021
  
  dd28f20f
- add rule to rename and cp final results · 7ca29cdc
  peguerin authored Jan 20, 2021
  
  7ca29cdc
- remove rename script · 145884c9
  peguerin authored Jan 20, 2021
  
  145884c9
- gitignore update · 0baf1583
  peguerin authored Jan 20, 2021
  
  0baf1583
19 Jan, 2021 9 commits
- update gitattributes · 07a6d56d
  peguerin authored Jan 19, 2021
  
  07a6d56d
- changelog update · 6de01e15
  peguerin authored Jan 19, 2021
  
  6de01e15
- remove useless clean script · 9da5b6bf
  peguerin authored Jan 19, 2021
  
  9da5b6bf
- a single snakemake command to run · 6b10d756
  peguerin authored Jan 19, 2021
  
  6b10d756
- scripts to run · 571cb731
  peguerin authored Jan 19, 2021
  
  571cb731
- config files adapted to the new pipeline architecture · f05f98e4
  peguerin authored Jan 19, 2021
  
  f05f98e4
- envs files · 9c2f7afe
  peguerin authored Jan 19, 2021
  
  9c2f7afe
- rules scripts · e00acc8a
  peguerin authored Jan 19, 2021
  
  e00acc8a
- a single snakefile for all the workflows · 0bd1fe9f
  peguerin authored Jan 19, 2021
  
  0bd1fe9f