GitLab

J'ai un soucis quand je lance la pipeline sur le jeu de données des caraibes.

Le problème arrive à l'étape 6 au moment de l'assignement. Tout le reste semble s'être bien passé, cf les logs et nohup situé dans le dossier suivant:

/media/superdisk/edna/working/santamarta_providencia/snakemake_rapidrun_swarm/

Voici l'erreur que j'obtiens, issue du log:

A value is trying to be set on a copy of a slice from a DataFrame.
Try using .loc[row_indexer,col_indexer] = value instead

See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
  from snakemake.utils import update_config
KeyError in line 17 of /media/superdisk/edna/working/santamarta_providencia/snakemake_rapidrun_swarm/00_rules/assignment.smk:
'assignment'
  File "/media/superdisk/edna/working/santamarta_providencia/snakemake_rapidrun_swarm/06_assignment/Snakefile", line 54, in <module>
  File "/media/superdisk/edna/working/santamarta_providencia/snakemake_rapidrun_swarm/00_rules/assignment.smk", line 17, in <module>