Issues · edna / snakemake_rapidrun_swarm

New issue

prepare_spygen enhancements ideas

#37 · created Dec 01, 2021 by vmarques enhancement
- 0
updated Dec 01, 2021
simplify workflow to have less steps and less heavy intermediate results 2 of 4 tasks completed

#34 · created Jun 04, 2021 by vmarques enhancement
- 2
updated Jun 04, 2021
Add multicore option for demultiplexing

#33 · created Jun 04, 2021 by vmarques enhancement
- CLOSED
- 4
updated Jun 04, 2021
prepare spygen file - ameliorations 8 of 9 tasks completed

#32 · created Apr 21, 2021 by vmarques enhancement
- 4
updated Apr 22, 2021
fastqc step

#27 · created Feb 19, 2021 by peguerin enhancement
- CLOSED
- 0
updated Feb 23, 2021
run snakemake on cluster Sun Grid Engine MBB

#23 · created Jan 19, 2021 by peguerin enhancement
- 0
updated Jan 19, 2021
deploy the workflow on ELIXIR cloud VM

#22 · created Jan 19, 2021 by peguerin enhancement
- 0
updated Jan 19, 2021
subworkflow

#15 · created Jan 12, 2021 by peguerin enhancement
- CLOSED
- 0
updated Jan 19, 2021
add test unit

#14 · created Jan 12, 2021 by peguerin enhancement
- 4
updated Jan 19, 2021
add benchmarks

#13 · created Jan 12, 2021 by peguerin enhancement
- 0
updated Jan 12, 2021
Simplify data export

#12 · created Dec 18, 2020 by vmarques enhancement
- CLOSED
- 1
updated Jan 20, 2021
Ease the data download

#9 · created Oct 09, 2020 by vmarques enhancement
- CLOSED
- 1
updated Jan 19, 2021
Change name files in 06_ folder

#5 · created Apr 16, 2020 by vmarques enhancement
- CLOSED
- 6
updated Jan 20, 2021
Ajouter base de ref custom

#4 · created Feb 13, 2020 by vmarques enhancement
- CLOSED
- 0
updated Jun 04, 2021
remove run or projet or sample using a file

#1 · created Feb 05, 2020 by peguerin enhancement
- CLOSED
- 1
updated Feb 06, 2020