Commit 0b4d4c6c authored by eortega's avatar eortega
Browse files

Last description of reminding files.

parent 49794d53
......@@ -19,7 +19,7 @@ Files:
* 07_run_vcf_parser_all_files.py*
* procedure.sh
* README.txt
* README.md
* requirements_py-env.txt
* vcf_parser3.py
......@@ -160,7 +160,7 @@ We tried out different parameters, this script is more a reminder of the command
This is the current script being used, the previous are old versions, before starting a git.
* 07_2_test.py :
* 07_2_test.py : This is for debuging. The inputs and outputs are in the folder `scripts/debug`
* 07_run_vcf_parser_all_files.py*
This is the analysis script.
......@@ -180,3 +180,38 @@ To run from ipython:
```
%run 07_2_run_vcf_parser_all_files.py
```
----
## The other scripts
### procedure.sh
The commands used to launch the scripts up here as well as the supplementary commands to separate the different data, extract and all other action is written here.
### README.md
This file :-P
### requirements_py-env.txt
File used by the script `00_create_py_env.sh`
It contains the list of libraries and versions used in python for this analysis.
### vcf_parser3.py
This is a python library which is imported by `07_2_run_vcf_parser_all_files.py`
It contains allows to import data from vcf files and put it in a pandas dataframe format to ease the analyses.
It works with objects: The _attributes_ contain information and the _methods_ are internal functions for that object. For example "remove control SNPs"
The last class allows to create a heatmap with matplotlib.
A more extended documentation will be made in the future
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