GitLab

système expert de choix d’un modèle halieutique de production comportant une variable environnementale, puis ajustement et validation statistique du modèle.

OTU clustering with SWARM on RAPIDRUN data encapsulated in SNAKEMAKE

How to design a primer ?

DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE

metabarcoding test data for snakemake rapidrun workflow

scripts to create our own reference database with our own sequences only and using the NCBI taxonomy

Code used by https://mbb.univ-montp2.fr/MBB/dnabushmeat

Un petit guide pour une utilisation des outils informatiques plus "responsable".

Visualization of the specificity of designed primers with mismatch plot

This project permits to check the specificity of already designed primers.

This project has for goal to filtrate efficiently eDNA sequences after PCR amplification and NGS, in order to eliminate the false sequences generated by these technologies.

Some basic tests to check websites :

https certificates, checksum of the index web page, HTTP answers.

Workflow Application Wrapper

Seek positions of variants onto genome and check if they are on an annotated region e.g. coding region. Then seek the proteic function of the gene

web-app interface investigating database Barcode of Life BOLD geo referenced mitochondrial DNA barcode.

Shiny App Generator