DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE

Collection of scripts to build a reference database.

This project aims to compare twelve bioinformatics pipelines based on five existing metabarcoding programs to make recommendations for data management in intraspecific variability studies using environmental DNA.

OTU clustering with SWARM on RAPIDRUN data encapsulated in SNAKEMAKE

gitbooks des formations et toutes les documentations publiques

Formulas for our local clusters.

mirror of modulefiles repository on gitlabpriv (but there is no reason to let this repository in a private state)

scripts to create our own reference database with our own sequences only and using the NCBI taxonomy

A web interface to design and run workflows as part of MBB-workflows framework

Workflow Application Wrapper

Shiny App Generator