GitLab

Workflow Application Wrapper

OTU clustering with SWARM on RAPIDRUN data encapsulated in SNAKEMAKE

This project has for goal to filtrate efficiently eDNA sequences after PCR amplification and NGS, in order to eliminate the false sequences generated by these 2 technologies.

This project has for goal to filtrate efficiently eDNA sequences after PCR amplification and NGS, in order to eliminate the false sequences generated by these 2 technologies.

The first step to begin with obitools and Bash

Shiny App Generator

Required dependencies for the Seascape genomics class.

Tool to parse and summarize VFC files with different plots

Rscripts and link to our server to download and assign environmental data to sample according to their coordinates

DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE

A shiny app that use esquisse package to quickly draw simple graphics with ggplot2 R package.

Some basic tests to check websites :

https certificates, checksum of the index web page, HTTP answers.