DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE

OTU clustering with SWARM on RAPIDRUN data encapsulated in SNAKEMAKE

Formulas for our local clusters.

gitbooks des formations et toutes les documentations publiques

Public copy from internal jsonreader2 project Jsonreader2 is a PHP Web parser for JSON files mainly used for SaltStack reporting.

Collection of scripts to build a reference database.

This project aims to compare twelve bioinformatics pipelines based on five existing metabarcoding programs to make recommendations for data management in intraspecific variability studies using environmental DNA.

mirror of modulefiles repository on gitlabpriv (but there is no reason to let this repository in a private state)

scripts to create our own reference database with our own sequences only and using the NCBI taxonomy

A web interface to design and run workflows as part of MBB-workflows framework

Workflow Application Wrapper