GitLab

Some basic tests to check websites :

https certificates, checksum of the index web page, HTTP answers.

Useful information about Rana temporaria genome and mitogenome. RADseq digestion, choices of restriction enzyme, RNA probe design

Workflow Application Wrapper

Shiny App Generator

Example plain HTML site using GitLab Pages: https://pages.gitlab.io/plain-html

Web Interface for COntainer PAckaging.

This Web application allows people to generate Singularity recipe or Dockerfiles from a Web User Interface.

Here is a version of the pipeline "only_obitools" using snakemake workflow management system.

Collection of scripts to build a reference database.

OTU clustering with SWARM on RAPIDRUN data encapsulated in SNAKEMAKE

système expert de choix d’un modèle halieutique de production comportant une variable environnementale, puis ajustement et validation statistique du modèle.

This project is based on the idea that gathering similar sequences allows to faithfully study them by eliminating sequences generated from PCR or NGS errors.

This project presents a pipeline based on OBITools commands in order to eliminate sequences interpreted as coming from PCR errors and to assign each remaining sequence to a taxon thanks to a reference database.

This project has for goal to filtrate efficiently eDNA sequences after PCR amplification and NGS, in order to eliminate the false sequences generated by these technologies.

The first step to begin with obitools and Bash

Required dependencies for the Seascape genomics class.