GitLab

OTU clustering with SWARM on RAPIDRUN data encapsulated in SNAKEMAKE

R Package Container Image Builder

data test to check metabarcoding workflow processing

Un petit guide pour une utilisation des outils informatiques plus "responsable".

DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE

DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE

Understand the NCBI database and to do request using entrez and Rentrez

design primers for intrapopulation metabarcoding

DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE

a shiny application to query information about our metabarcoding data

This project permits to check the specificity of already designed primers.

The first step to begin with obitools and Bash

This project presents a pipeline based on OBITools commands in order to eliminate sequences interpreted as coming from PCR errors and to assign each remaining sequence to a taxon thanks to a reference database.

Useful information about Rana temporaria genome and mitogenome. RADseq digestion, choices of restriction enzyme, RNA probe design

gitbooks des formations et toutes les documentations publiques

Ceci est un dépôt exemple pour git.

This project has for goal to filtrate efficiently eDNA sequences after PCR amplification and NGS, in order to eliminate the false sequences generated by these technologies.

Workflow Application Wrapper

Some basic tests to check websites :

https certificates, checksum of the index web page, HTTP answers.