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système expert de choix d’un modèle halieutique de production comportant une variable environnementale, puis ajustement et validation statistique du modèle.
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OTU clustering with SWARM on RAPIDRUN data encapsulated in SNAKEMAKE
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How to design a primer ?
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DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE
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metabarcoding test data for snakemake rapidrun workflow
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scripts to create our own reference database with our own sequences only and using the NCBI taxonomy
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Un petit guide pour une utilisation des outils informatiques plus "responsable".
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Visualization of the specificity of designed primers with mismatch plot
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This project permits to check the specificity of already designed primers.
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This project has for goal to filtrate efficiently eDNA sequences after PCR amplification and NGS, in order to eliminate the false sequences generated by these technologies.
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Some basic tests to check websites :
https certificates, checksum of the index web page, HTTP answers. -
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Workflow Application Wrapper
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Seek positions of variants onto genome and check if they are on an annotated region e.g. coding region. Then seek the proteic function of the gene
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Shiny App Generator