Here is a version of the pipeline "only_obitools" using snakemake workflow management system.

gitbooks des formations et toutes les documentations publiques

système expert de choix d’un modèle halieutique de production comportant une variable environnementale, puis ajustement et validation statistique du modèle.

Workflow Application Wrapper

Tool to parse and summarize VFC files with different plots

DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE

Data for the tutorial on how to analyze DNA metabarcoding data produced on Illumina sequencers

Web Interface for COntainer PAckaging.

This Web application allows people to generate Singularity recipe or Dockerfiles from a Web User Interface.

This repository is an adaptation of the poolDiffCNV repo. (https://github.com/andrewkern/poolDiffCNV).

R Package Container Image Builder

OTU clustering with SWARM on RAPIDRUN data encapsulated in SNAKEMAKE

Formulas for our local clusters.

Collection of scripts to build a reference database.

Formation R + git + Rmd

Check WGS data