Explore projects

Source code to fit a competitive Lotka-Volterra Model to tri-specific time series (using Rstan).

design primers for intrapopulation metabarcoding

This project aims to compare twelve bioinformatics pipelines based on five existing metabarcoding programs to make recommendations for data management in intraspecific variability studies using environmental DNA.

genepop

DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE

Useful information about Rana temporaria genome and mitogenome. RADseq digestion, choices of restriction enzyme, RNA probe design

number of SNPs, distance between consecutive loci (in bp) and number of SNPs located on a coding region for each species

Visualization of the specificity of designed primers with mismatch plot

a shiny application to query information about our metabarcoding data

A shiny app that use esquisse package to quickly draw simple graphics with ggplot2 R package.

Scripts to prepare SNP data for analysis

Understand the NCBI database and to do request using entrez and Rentrez