Explore projects

Code used by https://mbb.univ-montp2.fr/MBB/dnabushmeat

Un petit guide pour une utilisation des outils informatiques plus "responsable".

Visualization of the specificity of designed primers with mismatch plot

This project permits to check the specificity of already designed primers.

This project has for goal to filtrate efficiently eDNA sequences after PCR amplification and NGS, in order to eliminate the false sequences generated by these technologies.

web-app interface investigating database Barcode of Life BOLD geo referenced mitochondrial DNA barcode.

a shiny application to query information about our metabarcoding data

DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE

Useful information about Rana temporaria genome and mitogenome. RADseq digestion, choices of restriction enzyme, RNA probe design

number of SNPs, distance between consecutive loci (in bp) and number of SNPs located on a coding region for each species

This project is based on the idea that gathering similar sequences allows to faithfully study them by eliminating sequences generated from PCR or NGS errors.

This project presents a pipeline based on OBITools commands in order to eliminate sequences interpreted as coming from PCR errors and to assign each remaining sequence to a taxon thanks to a reference database.

Using Git in a team: learn and practice Git and discover its features !

data test to check metabarcoding workflow processing

DNA Metabarcoding analyse on RAPIDRUN data with OBITOOLS encapsulated in SNAKEMAKE

Understand the NCBI database and to do request using entrez and Rentrez

design primers for intrapopulation metabarcoding

The first step to begin with obitools and Bash