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  • edna
  • Issues

  • Open 23
  • Closed 49
  • All 72
  • Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title
  • download_mitochrondrion_ncbi.sh: some incomplete records (server MARBEC)
    reference_database#9 · created May 09, 2022 by mbruno   bug
    • 1
    updated May 09, 2022
  • The EMBL database is no longer updated   2 of 3 tasks completed
    reference_database#8 · created May 02, 2022 by mbruno
    • 0
    updated May 02, 2022
  • Error running pipeline
    snakemake_rapidrun_obitools#14 · created Feb 02, 2022 by vmarques
    • 2
    updated Feb 17, 2022
  • prepare_spygen enhancements ideas
    snakemake_rapidrun_swarm#37 · created Dec 01, 2021 by vmarques   enhancement
    • 0
    updated Dec 01, 2021
  • Enhancements
    snakemake_rapidrun_obitools#13 · created Nov 02, 2021 by vmarques
    • 1
    updated Feb 21, 2022
  • Cleaning NCBI
    reference_database#6 · created Oct 29, 2021 by vmarques   enhancement
    • 0
    updated Oct 29, 2021
  • Use less space
    snakemake_rapidrun_obitools#12 · created Jul 12, 2021 by vmarques
    • 4
    updated Apr 01, 2022
  • simplify workflow to have less steps and less heavy intermediate results   2 of 4 tasks completed
    snakemake_rapidrun_swarm#34 · created Jun 04, 2021 by vmarques   enhancement
    • 2
    updated Jun 04, 2021
  • ENA releases are no more - update needed
    reference_database#5 · created May 01, 2021 by vmarques
    • 2
    updated Oct 29, 2021
  • prepare spygen file - ameliorations   8 of 9 tasks completed
    snakemake_rapidrun_swarm#32 · created Apr 21, 2021 by vmarques   enhancement
    • 4
    updated Apr 22, 2021
  • error empty files all.fasta step 14 & 15
    snakemake_rapidrun_swarm#29 · created Feb 22, 2021 by vmarques   bug
    • 1
    updated Feb 22, 2021
  • fastqc step
    snakemake_rapidrun_obitools#10 · created Feb 19, 2021 by peguerin   enhancement
    • 0
    updated Feb 19, 2021
  • add job ressources control in config file
    snakemake_rapidrun_obitools#9 · created Feb 18, 2021 by vmarques   enhancement
    • 2
    updated Nov 22, 2021
  • Update
    reference_database#4 · created Feb 18, 2021 by vmarques
    • 0
    updated Feb 18, 2021
  • run snakemake on cluster Sun Grid Engine MBB
    snakemake_rapidrun_swarm#23 · created Jan 19, 2021 by peguerin   enhancement
    • 0
    updated Jan 19, 2021
  • deploy the workflow on ELIXIR cloud VM
    snakemake_rapidrun_swarm#22 · created Jan 19, 2021 by peguerin   enhancement
    • 0
    updated Jan 19, 2021
  • RAPIDRUN mode tutorial
    snakemake_rapidrun_swarm#21 · created Jan 19, 2021 by peguerin   documentation
    • 0
    updated Jan 19, 2021
  • CLASSIC mode tutorial
    snakemake_rapidrun_swarm#20 · created Jan 19, 2021 by peguerin   documentation
    • 1
    updated Nov 22, 2021
  • add test unit
    snakemake_rapidrun_swarm#14 · created Jan 12, 2021 by peguerin   enhancement
    • 4
    updated Jan 19, 2021
  • add benchmarks
    snakemake_rapidrun_swarm#13 · created Jan 12, 2021 by peguerin   enhancement
    • 0
    updated Jan 12, 2021
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