Commit 46e5b62a authored by peguerin's avatar peguerin
Browse files

mitoz script

parent 2fc2d755
###############################################################################
## install docker
sudo apt-get update -y
sudo apt-get install \
apt-transport-https \
ca-certificates \
curl \
software-properties-common
curl -fsSL https://download.docker.com/linux/ubuntu/gpg | sudo apt-key add -
sudo add-apt-repository \
"deb [arch=amd64] https://download.docker.com/linux/ubuntu \
$(lsb_release -cs) \
stable"
sudo apt-get update
sudo apt-get install docker-ce
sudo docker run hello-world
###############################################################################
## MitoZ
## mitoz singularuty img
......@@ -5,4 +22,10 @@ sudo singularity pull --name MitoZ.simg shub://linzhi2013/MitoZ:v2.3
## extract fastq seq python3 script
git clone https://github.com/linzhi2013/extractfq.git
###############################################################################
## MITObim
## MITObim docker img
sudo docker pull chrishah/mitobim
git clone https://github.com/chrishah/MITObim.git
\ No newline at end of file
......@@ -22,5 +22,4 @@ $MITOZ all --genetic_code 2 --clade Chordata --outprefix mito_mullus \
--filter_taxa_method 1 \
--requiring_taxa 'Chordata'
/media/bigvol/peguerin
\ No newline at end of file
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