Commit a4641037 authored by peguerin's avatar peguerin

fix name run

parent bc770038
......@@ -9,7 +9,7 @@ RUN_FOLDER="/media/superdisk/popedna/donnees/ngs/mullus_surmuletus/"
for FICHIER in $(ls ${RUN_FOLDER})
do
SAMPLE=`basename ${FICHIER}`
singularity run --bind /media/superdisk:/media/superdisk/ $SINGULARITY_IMG ${RUN_FOLDER}/${SAMPLE}.fastq.gz -o mullus_surmuletus/fastqc_report/
singularity run --bind /media/superdisk:/media/superdisk/ $SINGULARITY_IMG ${RUN_FOLDER}/${SAMPLE} -o mullus_surmuletus/fastqc_report/
done
......
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