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jlopez
RPACIB
Commits
8913942c
Commit
8913942c
authored
Apr 18, 2018
by
jlopez
Browse files
Fix docker conda
parent
deff05fe
Changes
1
Hide whitespace changes
Inline
Side-by-side
server/opt_home.R
View file @
8913942c
...
...
@@ -390,10 +390,10 @@ createBiocontainer <- function(result, haveR) {
result
<-
paste
(
result
,
"RUN mkdir /opt/biotools"
,
sep
=
"\n"
)
result
<-
paste
(
result
,
"RUN mkdir /opt/biotools/bin"
,
sep
=
"\n"
)
result
<-
paste
(
result
,
"RUN chmod 777 -R /opt/biotools/"
,
sep
=
"\n"
)
result
<-
paste
(
result
,
"
RUN export
PATH=/opt/biotools/bin:$PATH"
,
sep
=
"\n"
)
result
<-
paste
(
result
,
"
ENV
PATH=/opt/biotools/bin:$
{
PATH
}
"
,
sep
=
"\n"
)
result
<-
paste
(
result
,
"RUN chmod 777 -R /opt/conda/"
,
sep
=
"\n"
)
result
<-
paste
(
result
,
"
RUN export
PATH=/opt/conda/bin:$PATH"
,
sep
=
"\n"
)
result
<-
paste
(
result
,
"
ENV
PATH=/opt/conda/bin:$
{
PATH
}
"
,
sep
=
"\n"
)
if
(
!
haveR
)
{
result
<-
paste
(
result
,
"RUN conda config --add channels r"
,
sep
=
"\n"
)
...
...
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