Commit 8913942c authored by jlopez's avatar jlopez
Browse files

Fix docker conda

parent deff05fe
......@@ -390,10 +390,10 @@ createBiocontainer <- function(result, haveR) {
result <- paste(result, "RUN mkdir /opt/biotools", sep = "\n")
result <- paste(result, "RUN mkdir /opt/biotools/bin", sep = "\n")
result <- paste(result, "RUN chmod 777 -R /opt/biotools/", sep = "\n")
result <- paste(result, "RUN export PATH=/opt/biotools/bin:$PATH", sep = "\n")
result <- paste(result, "ENV PATH=/opt/biotools/bin:${PATH}", sep = "\n")
result <- paste(result, "RUN chmod 777 -R /opt/conda/", sep = "\n")
result <- paste(result, "RUN export PATH=/opt/conda/bin:$PATH", sep = "\n")
result <- paste(result, "ENV PATH=/opt/conda/bin:${PATH}", sep = "\n")
if(!haveR) {
result <- paste(result, "RUN conda config --add channels r", sep = "\n")
......
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