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jlopez
RPACIB
Commits
bde5cf7f
Commit
bde5cf7f
authored
May 07, 2018
by
jlopez
Browse files
Update container
parent
a138f670
Changes
1
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container.yaml
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bde5cf7f
...
...
@@ -62,6 +62,7 @@ containers: [
,{
name
:
"
spades"
,
version
:
"
3.11.1"
,
description
:
"
Tools
(written
in
C
using
htslib)
for
manipulating
next-generation
sequencing
data"
,
documentation
:
"
http://bioinf.spbau.ru/spades"
,
install
:
[
"
conda
install
spades=3.11.1"
]
}
,{
name
:
"
spectra-cluster-cli"
,
version
:
"
1.0.1"
,
description
:
"
PRIDE
Cluster
algorithm
to
cluster
heterogeneous
mass
spectra"
,
documentation
:
"
https://github.com/spectra-cluster/spectra-cluster-cli"
,
install
:
[
"
conda
install
spectra-cluster-cli=1.0.1"
]
}
,{
name
:
"
stacks"
,
version
:
"
1.44"
,
description
:
"
Stacks
was
developed
to
work
with
restriction
enzyme-based
data,
such
as
RAD-seq,
for
the
purpose
of
building
genetic
maps
and
conducting
population"
,
documentation
:
"
http://catchenlab.life.illinois.edu/stacks/"
,
install
:
[
"
conda
install
stacks=1.44"
]
}
,{
name
:
"
stacks"
,
version
:
"
2.0"
,
description
:
"
Stacks
was
developed
to
work
with
restriction
enzyme-based
data,
such
as
RAD-seq,
for
the
purpose
of
building
genetic
maps
and
conducting
population"
,
documentation
:
"
http://catchenlab.life.illinois.edu/stacks/"
,
install
:
[
"
conda
install
stacks=2.0"
]
}
,{
name
:
"
tandem"
,
version
:
"
10-12-01-1"
,
description
:
"
software
that
can
match
tandem
mass
spectra
with
peptide
sequences"
,
documentation
:
"
http://www.thegpm.org/tandem/"
,
install
:
[]
}
,{
name
:
"
tandem"
,
version
:
"
15-12-15-2"
,
description
:
"
software
that
can
match
tandem
mass
spectra
with
peptide
sequences"
,
documentation
:
"
http://www.thegpm.org/tandem/"
,
install
:
[]
}
,{
name
:
"
tophat"
,
version
:
"
2.1.1"
,
description
:
"
TopHat
is
a
fast
splice
junction
mapper
for
RNA-Seq
reads"
,
documentation
:
"
https://ccb.jhu.edu/software/tophat/index.shtml"
,
install
:
[
"
conda
install
tophat=2.1.1"
]
}
...
...
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