Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
jlopez
RPACIB
Commits
d66cad67
Commit
d66cad67
authored
Jun 06, 2018
by
khalid
Browse files
New package ...
parent
dda0636a
Changes
2
Hide whitespace changes
Inline
Side-by-side
container.yaml
View file @
d66cad67
...
...
@@ -15,6 +15,7 @@ containers: [
,{
name
:
"
cava"
,
version
:
"
1.1.1"
,
description
:
"
lightweight,
fast
and
flexible
NGS
variant
annotation
tool"
,
documentation
:
"
http://www.well.ox.ac.uk/cava"
,
install
:
[]
}
,{
name
:
"
clustal-omega"
,
version
:
"
1.2.1-1"
,
description
:
"
general
purpose
multiple
sequence
alignment
program
for
proteins"
,
documentation
:
"
http://www.clustal.org/omega/#Documentation"
,
install
:
[
"
apt-get
install
clustalo"
]
}
,{
name
:
"
comet"
,
version
:
"
1.1.0"
,
description
:
"
an
open
source
tandem
mass
spectrometry
sequence
database
search
tool"
,
documentation
:
"
http://comet-ms.sourceforge.net/parameters/parameters_2016010/"
,
install
:
[
"
conda
install
-c
auto
comet=1.1.0"
]
}
,{
name
:
"
cross-species
scaffolding"
,
version
:
"
"
,
description
:
"
Generate
in
silico
mate-pair
reads
from
single-/paired-end
reads
of
your
organism
of
interest"
,
documentation
:
"
https://github.com/thackl/cross-species-scaffolding"
,
install
:
[
"
git
clone
https://github.com/thackl/cross-species-scaffolding.git;
cd
cross-species-scaffolding;
make
dependencies"
]
}
,{
name
:
"
crux"
,
version
:
"
2.1"
,
description
:
"
a
software
toolkit
for
tandem
mass
spectrometry
analysis"
,
documentation
:
"
http://cruxtoolkit.sourceforge.net/"
,
install
:
[]
}
,{
name
:
"
denovogui"
,
version
:
"
1.10.4"
,
description
:
"
graphical
user
interface
for
de
novo
sequencing
of
tandem
mass
spectra"
,
documentation
:
"
https://github.com/compomics/denovogui"
,
install
:
[]
}
,{
name
:
"
denovogui"
,
version
:
"
1.5.2"
,
description
:
"
graphical
user
interface
for
de
novo
sequencing
of
tandem
mass
spectra"
,
documentation
:
"
https://github.com/compomics/denovogui"
,
install
:
[]
}
...
...
pages/pages_def_home.R
View file @
d66cad67
...
...
@@ -20,8 +20,11 @@ tabHome = fluidPage(align="left",
p
(
"Add your tools by clicking on the corresponding field in the table. They appear in the field so below."
),
br
(),
p
(
"Use 'Generate' button to generate your recipe in the preview area then copy/paste the text or use dowload button to get your file."
),
br
()
p
(
"# To build the image from the recipes file named ubuntu6.10_stacks2.0.simg :"
),
p
(
"sudo singularity build ubuntu6.10_stacks2.0.simg ubuntu6.10_stacks2.0.recipes"
),
p
(
"# to run a program inside the image container :"
),
p
(
" singularity exec ubuntu6.10_stacks2.0.simg python --version "
),
p
(
"singularity exec ubuntu6.10_stacks2.0.simg python -c 'import pysam; print 2*2'"
)
)),
column
(
width
=
2
,
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment