Add general params section

app/pipelineR2.yml

 App:
   project: /home/mbb/Documents/sag/app2
-  general: { title: Pipeline in R, skin: purple, menu_width: 230 }
+  general: {title: RNAseq pipeline, skin: blue, menu_width: 230}
   pages:
-    - icon: pencil
-      label: Quality check
-      name: qualitycheck
-      content:
-        - panel: Quality check
-          name: panel1
-          boxes:
-            - { name: fastqc, defined: true, concat_name_param: false }
-      pipeline:
-        shiny_button:
-          {
-            name: runP,
-            type: button,
-            icon: save,
-            class: btn btn-primary,
-            label: Run pipeline,
-          }
-        program: python
-        options:
-          - {
-              name: "",
-              type: value,
-              value: /home/jimmy/jimmy/projets/sag/app/mon_script.py,
-            }
-          - { name: -params_file, type: panel }
-        output_format: markdown
-        output: /home/jimmy/jimmy/projets/sag/app/result.Rmd
-    - name: quantification
-      icon: file
-      label: Quantification
-      content:
-        - panel: Quantification
-          name: panel2
-          boxes:
-            - { name: kallisto, defined: true, concat_name_param: false }
-            - { name: salmon, defined: true, concat_name_param: false }
-      pipeline:
-        shiny_button:
-          {
-            name: runApp,
-            type: button,
-            icon: play,
-            class: btn btn-primary,
-            label: Run,
-          }
-        program: pwd
-        options:
-          - { name: "", type: shiny, value: first_name }
-          - { name: "", type: shiny, value: last_name }
-        output_format: table
-        output: /home/jimmy/jimmy/projets/sag/app/cars.csv
+  - icon: pencil
+    label: Global parameters
+    name: global_params
+    content:
+    - panel: Global parameters
+      name: global_params
+      boxes:
+      - name: global_params
+        title: 'Global parameters :'
+        status: success
+        defined: false
+        content:
+        - {name: sample_directory, type: text, value: /, label: 'Samples directory: '}
+        - {name: sample_suffix, type: text, value: .fastq.gz, label: 'Samples suffix: '}
+        - {name: transcripts_adress, type: text, value: transcripts.fasta.gz, label: 'Transcripts address: '}
+        - {name: genome_adress, type: text, value: genome.fasta.gz, label: 'Genome address: '}
+        - {name: annotations_adress, type: text, value: annotations.gtf.gz, label: 'Annotations address: '}
+    pipeline:
+      shiny_button: {name: runP, type: button, icon: save, class: btn btn-primary, label: Run pipeline}
+      program: python
+      options:
+      - {name: null, type: value, value: /home/jimmy/jimmy/projets/sag/app/mon_script.py}
+      - {name: -params_file, type: panel}
+      output_format: markdown
+      output: /home/jimmy/jimmy/projets/sag/app/result.Rmd
+  - icon: pencil
+    label: Quality check
+    name: quality_check
+    content:
+    - panel: Quality check
+      name: quality_check
+      boxes:
+      - {name: fastqc, defined: true, concat_name_param: false}
+    pipeline:
+      shiny_button: {name: runP, type: button, icon: save, class: btn btn-primary,
+        label: Run pipeline}
+      program: python
+      options:
+      - {name: null, type: value, value: /home/jimmy/jimmy/projets/sag/app/mon_script.py}
+      - {name: -params_file, type: panel}
+      output_format: markdown
+      output: /home/jimmy/jimmy/projets/sag/app/result.Rmd
+  - icon: pencil
+    label: Quantification
+    name: quantification
+    content:
+    - panel: Quantification
+      name: quantification
+      boxes:
+      - {name: kallisto, defined: true, concat_name_param: false}
+      - {name: salmon, defined: true, concat_name_param: false}
+    pipeline:
+      shiny_button: {name: runP, type: button, icon: save, class: btn btn-primary, label: Run pipeline}
+      program: python
+      options:
+      - {name: null, type: value, value: /home/jimmy/jimmy/projets/sag/app/mon_script.py}
+      - {name: -params_file, type: panel}
+      output_format: markdown
+      output: /home/jimmy/jimmy/projets/sag/app/result.Rmd
   pipeline:
-    shiny_button:
-      {
-        name: runAllPipeline,
-        type: button,
-        icon: play,
-        class: btn btn-info,
-        label: Run pipeline,
-      }
-    program: "singularity exec /home/mbb/Documents/singularities/pipelineRNA.simg snakemake"
+    shiny_button: {name: runAllPipeline, type: button, icon: save, class: btn btn-info, label: Export pipeline}
+    program: python
     options:
-      - { name: "-s", type: value, value: "snakefile" }
-    output_format: markdown
-    output: /home/jimmy/jimmy/projets/sag/app/result.Rmd
+    - {name: '', type: value, value: make_snakefile.py}