Commit a555ac4b authored by mmassaviol's avatar mmassaviol
Browse files

Add predefined tools (fastqc, kallisto, salmon)

parent 678a40c4
......@@ -10,4 +10,4 @@ content: [
{name: "param9", type: "checkbox", value: FALSE, label: "Checkbox 2"},
{name: "testButton", type: "button", icon: "", class: "btn btn-success", label: "Test"},
]
}
\ No newline at end of file
}
{
name: "fastqc",
title: "FastQC :",
status: "success",
content: [
{name: "threads_fastqc", type: "slider", min: 1, max: 16, step: 1, value: [1], label: "Number of threads to use :"},
]
}
{
name: "kallisto",
title: "kallisto :",
status: "success",
content: [
{name: "kallisto_index_input", type: "file", multiple: FALSE, accept: [".fasta", ".fasta.gz"], label: "Choose reference fasta file :"},
{name: "help_strand", type: "help", label: "For strand specific mode choose --fr-stranded if the first read is forward and choose --rf-stranded if the first read is reverse"},
{name: "kallisto_quant_pe_stranded", type: "radio", selected: "No", choices: ["No", "--fr-stranded", "--rf-stranded"], label: "Strand specific mode :"},
]
}
{
name: "salmon",
title: "salmon :",
status: "success",
content: [
{name: "salmon_index_input", type: "file", multiple: FALSE, accept: [".fasta", ".fasta.gz"], label: "Choose reference fasta file :"},
]
}
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