Add predefined tools (fastqc, kallisto, salmon)

predefined_tools/biotoolB.yml

@@ -10,4 +10,4 @@ content: [
   {name: "param9", type: "checkbox", value: FALSE, label: "Checkbox 2"},
   {name: "testButton", type: "button", icon: "", class: "btn btn-success", label: "Test"}, 
 ]
-}
\ No newline at end of file
+}

predefined_tools/fastqc.yml

+{
+name: "fastqc",
+title: "FastQC :", 
+status: "success", 
+content: [
+  {name: "threads_fastqc", type: "slider", min: 1, max: 16, step: 1, value: [1], label: "Number of threads to use :"},
+]
+}

predefined_tools/kallisto.yml

+{
+name: "kallisto",
+title: "kallisto :", 
+status: "success", 
+content: [
+  {name: "kallisto_index_input", type: "file", multiple: FALSE, accept: [".fasta", ".fasta.gz"], label: "Choose reference fasta file :"},
+  {name: "help_strand", type: "help", label: "For strand specific mode choose --fr-stranded if the first read is forward and choose --rf-stranded if the first read is reverse"},
+  {name: "kallisto_quant_pe_stranded", type: "radio", selected: "No", choices: ["No", "--fr-stranded", "--rf-stranded"], label: "Strand specific mode :"},
+]
+}

predefined_tools/salmon.yml

+{
+name: "salmon",
+title: "salmon :", 
+status: "success", 
+content: [
+  {name: "salmon_index_input", type: "file", multiple: FALSE, accept: [".fasta", ".fasta.gz"], label: "Choose reference fasta file :"},
+]
+}