Remove predefined tools

main.R

@@ -297,10 +297,6 @@ generate_pages_server <- function() {
           if(length(boxes) > 1){
             res <- res + "\nconditionalPanel(condition = \"input.select"+content$name+" == '"+box$name+"'\","
           }
-
-          #if(box$defined == TRUE) {
-          #  box <- get_predefined_box(box, APP$pages[[x]]$name)
-          #} 
           
           res <- generate_page_box(panel, box, res)
 

predefined_tools/biotoolA.yml

-{
-name: "biotoolA",
-title: "Tool biotoolA :", 
-status: "success", 
-content: [
-  {name: "param1", type: "text", value: "", label: "Input Param1 :"},
-  {name: "param8", type: "checkbox", value: TRUE, label: "Checkbox 1"},
-  {name: "param9", type: "checkbox", value: FALSE, label: "Checkbox 2"},
-  {name: "testButton", type: "button", icon: "", class: "btn btn-success", label: "Test"}, 
-]
-}

predefined_tools/biotoolB.yml

-{
-name: "biotoolB",
-title: "Tool biotoolB :", 
-status: "success", 
-content: [
-  {name: "param1", type: "text", value: "", label: "Input Param1 :"},
-  {name: "param2", type: "slider", min: 0, max: 100, step: 1, value: [50], label: "Slider param2 :"},
-  {name: "param3", type: "slider", min: 10, max: 20, step: 0.1, value: [11.8, 19.6], label: "Slider param3 :"},
-  {name: "param8", type: "checkbox", value: TRUE, label: "Checkbox 1"},
-  {name: "param9", type: "checkbox", value: FALSE, label: "Checkbox 2"},
-  {name: "testButton", type: "button", icon: "", class: "btn btn-success", label: "Test"}, 
-]
-}

predefined_tools/fastqc.yml

-{
-name: "fastqc",
-title: "FastQC :", 
-status: "success", 
-content: [
-  {name: "fastqc_threads", type: "slider", min: 1, max: 16, step: 1, value: [1], label: "Number of threads to use :"},
-]
-}

predefined_tools/kallisto.yml

-{
-name: "kallisto",
-title: "kallisto :", 
-status: "success", 
-content: [
-  {name: "kallisto_index_input", type: "file", multiple: FALSE, accept: [".fasta", ".fasta.gz"], label: "Choose reference fasta file: "},
-  {name: "help_strand", type: "help", label: "For strand specific mode choose --fr-stranded if the first read is forward and choose --rf-stranded if the first read is reverse"},
-  {name: "kallisto_quant_pe_stranded", type: "radio", selected: "No", choices: ["No", "--fr-stranded", "--rf-stranded"], label: "Strand specific mode: "},
-  {name: "kallisto_quant_threads", type: "slider", min: 1, max: 16, step: 1, value: [1], label: "Number of threads to use: "},
-]
-}

predefined_tools/salmon.yml

-{
-name: "salmon",
-title: "salmon :", 
-status: "success", 
-content: [
-  {name: "salmon_index_input", type: "file", multiple: FALSE, accept: [".fasta", ".fasta.gz"], label: "Choose reference fasta file :"},
-]
-}