Commits · d5f6201c12539a5116ca2d64ad6641e209c67716 · jlopez / sagJL

22 Sep, 2020 3 commits
- Rename button · d5f6201c
  mmassaviol authored Sep 22, 2020
  
  d5f6201c
- Add dry run · 58bbf5f0
  mmassaviol authored Sep 22, 2020
```
Create run summary when run pipeline
```
  58bbf5f0
- Update running mecanism · dfec4567
  mmassaviol authored Sep 22, 2020
  
  dfec4567
10 Sep, 2020 1 commit
- Add log of rulegraph in the interface on error · 879fac2b
  mmassaviol authored Sep 10, 2020
  
  879fac2b
07 Sep, 2020 1 commit
- Update SAG (output dir is now a parameter) · 9b5be606
  mmassaviol authored Sep 07, 2020
  
  9b5be606
26 Aug, 2020 1 commit
- Update force rerun rule (by_step version) · 14262083
  mmassaviol authored Aug 26, 2020
  
  14262083
30 Jun, 2020 1 commit
- Remove yaml int to char · 44970030
  mmassaviol authored Jun 30, 2020
```
(cause snakemake threads error)
```
  44970030
29 Jun, 2020 1 commit
- Debug error with updateTextInput & parseFilePaths · 3fa2cb59
  mmassaviol authored Jun 29, 2020
```
(error with new shiny versions)
```
  3fa2cb59
04 Jun, 2020 1 commit
- Debug yaml loading of numbers · d6c6869c
  mmassaviol authored Jun 04, 2020
  
  d6c6869c
15 May, 2020 1 commit
- Debug error turning many floats to scientific format · a81c652e
  mmassaviol authored May 15, 2020
  
  a81c652e
06 Dec, 2019 1 commit
- Update (add dowload config file) · 331979e9
  mmassaviol authored Dec 06, 2019
  
  331979e9
02 Dec, 2019 2 commits
- Debug condition "rerun" · 70f43c29
  mmassaviol authored Dec 02, 2019
  
  70f43c29
- Add checkbox to rerun incomplete · 14b33c88
  mmassaviol authored Dec 02, 2019
  
  14b33c88
18 Nov, 2019 1 commit
- Remove knitr library (unused) · d0c2f93d
  mmassaviol authored Nov 18, 2019
  
  d0c2f93d
09 Oct, 2019 1 commit
- Add an option to force running again from a step · e1e57ef3
  mmassaviol authored Oct 09, 2019
  
  e1e57ef3
18 Jul, 2019 1 commit
- Debug volumes and changer default threads number · 699af2cd
  mmassaviol authored Jul 18, 2019
  
  699af2cd
05 Jul, 2019 1 commit
- Update params file changes · 80704f20
  mmassaviol authored Jul 05, 2019
```
Add unlock button
```
  80704f20
23 May, 2019 1 commit
- Debug path group file (get_samples) · 353ef967
  mmassaviol authored May 23, 2019
  
  353ef967
22 May, 2019 1 commit
- Update (open links in new tabs) · 447a1704
  mmassaviol authored May 22, 2019
```
Limit threads available
```
  447a1704
21 May, 2019 2 commits
- Update volumes management for shinyfiles · 3e16c91b
  mmassaviol authored May 21, 2019
  
  3e16c91b
- Update sag yaml configuration file as an attribute · 408cdcb2
  mmassaviol authored May 21, 2019
  
  408cdcb2
03 May, 2019 1 commit
- Add input$sample_suffix to get_samples.py call · 07508cc1
  mmassaviol authored May 03, 2019
  
  07508cc1
01 Apr, 2019 1 commit
- Add textArea input type · 190b5c75
  mmassaviol authored Apr 01, 2019
  
  190b5c75
22 Mar, 2019 1 commit
- Update shinyfiles inputs (and reload of them) · b3829501
  mmassaviol authored Mar 22, 2019
  
  b3829501
21 Mar, 2019 1 commit
- Add input types (shinyFiles) · ae9898cd
  mmassaviol authored Mar 21, 2019
```
Update reload (when results_dir is selected)
```
  ae9898cd
20 Mar, 2019 1 commit
- Add compare_params, force rerun when params change · 3c7c7084
  mmassaviol authored Mar 20, 2019
  
  3c7c7084
18 Mar, 2019 1 commit
- Update (remove or comment unused parts) · dcd655a6
  mmassaviol authored Mar 18, 2019
```
Add function save_params
```
  dcd655a6
01 Mar, 2019 1 commit
- Add selection of step to reach in the workflow · a905c2b0
  mmassaviol authored Mar 01, 2019
  
  a905c2b0
26 Feb, 2019 4 commits
- Debug (remove running file when workflow is over) · da09680d
  mmassaviol authored Feb 26, 2019
  
  da09680d
- Add show running workflow on reload if still running · e0426883
  mmassaviol authored Feb 26, 2019
```
Debug on reload function (add reload off select step tools)
```
  e0426883
- Add little script to help integrating r code to sag · 59d255a4
  mmassaviol authored Feb 26, 2019
  
  59d255a4
- Big Update · 7c6e72b9
  mmassaviol authored Feb 26, 2019
```
- add reload of an existing workflow
- show running workflow in a tab
```
  7c6e72b9
19 Feb, 2019 1 commit

mmassaviol authored Feb 19, 2019

Add event to hide param specific to Single end reads or paired end reads

f525b299

18 Feb, 2019 1 commit
- Add disabling inputs when command running · ec883199
  mmassaviol authored Feb 18, 2019
```
Add tryCatch arround snakemake commands
Replace DAG by RULEGRAPH
```
  ec883199
04 Feb, 2019 1 commit
- Update, default tool selection and group loading with sample detection · abd0bf5f
  mmassaviol authored Feb 04, 2019
  
  abd0bf5f
29 Jan, 2019 1 commit
- Update show dag and report inside the app · 8f00e050
  mmassaviol authored Jan 29, 2019
  
  8f00e050
24 Jan, 2019 1 commit
- Add new button to create DAG with snakemake and display it in a tab · b75c7b23
  mmassaviol authored Jan 24, 2019
  
  b75c7b23
22 Jan, 2019 1 commit
- Update agregate params with param file from WAW · b9695b0e
  mmassaviol authored Jan 22, 2019
```
Remove download button
Add cores input to use in run command
```
  b9695b0e
18 Jan, 2019 2 commits
- Remove predefined tools · e2bd3abb
  mmassaviol authored Jan 18, 2019
  
  e2bd3abb
- Update wrong varname · 28f0dfea
  mmassaviol authored Jan 18, 2019
  
  28f0dfea