Commit fcb5c703 authored by jlopez's avatar jlopez
Browse files

Merge branch 'develop' into 'master'

Develop

Closes #14

See merge request !2
parents 28bb7c97 3d3b9262
Pipeline #201 failed
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document,Z=['Edge','Trident','Firefox'],$=0,ee=0;ee<Z.length;ee+=1)if(Q&&0<=navigator.userAgent.indexOf(Z[ee])){$=1;break}var i,te=Q&&window.Promise,oe=te?function(e){var t=!1;return function(){t||(t=!0,window.Promise.resolve().then(function(){t=!1,e()}))}}:function(e){var t=!1;return function(){t||(t=!0,setTimeout(function(){t=!1,e()},$))}},ie=function(){return void 0==i&&(i=-1!==navigator.appVersion.indexOf('MSIE 10')),i},ne=function(e,t){if(!(e instanceof t))throw new TypeError('Cannot call a class as a function')},re=function(){function e(e,t){for(var o,n=0;n<t.length;n++)o=t[n],o.enumerable=o.enumerable||!1,o.configurable=!0,'value'in o&&(o.writable=!0),Object.defineProperty(e,o.key,o)}return function(t,o,i){return o&&e(t.prototype,o),i&&e(t,i),t}}(),pe=function(e,t,o){return t in e?Object.defineProperty(e,t,{value:o,enumerable:!0,configurable:!0,writable:!0}):e[t]=o,e},se=Object.assign||function(e){for(var t,o=1;o<arguments.length;o++)for(var i in 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se({name:e},n.options.modifiers[e])}).sort(function(e,t){return e.order-t.order}),this.modifiers.forEach(function(t){t.enabled&&e(t.onLoad)&&t.onLoad(n.reference,n.popper,n.options,t,n.state)}),this.update();var p=this.options.eventsEnabled;p&&this.enableEventListeners(),this.state.eventsEnabled=p}return re(t,[{key:'update',value:function(){return N.call(this)}},{key:'destroy',value:function(){return P.call(this)}},{key:'enableEventListeners',value:function(){return I.call(this)}},{key:'disableEventListeners',value:function(){return R.call(this)}}]),t}();return fe.Utils=('undefined'==typeof window?global:window).PopperUtils,fe.placements=de,fe.Defaults={placement:'bottom',eventsEnabled:!0,removeOnDestroy:!1,onCreate:function(){},onUpdate:function(){},modifiers:{shift:{order:100,enabled:!0,fn:function(e){var t=e.placement,o=t.split('-')[0],i=t.split('-')[1];if(i){var n=e.offsets,r=n.reference,p=n.popper,s=-1!==['bottom','top'].indexOf(o),d=s?'left':'top',a=s?'width':'height',l={start:pe({},d,r[d]),end:pe({},d,r[d]+r[a]-p[a])};e.offsets.popper=se({},p,l[i])}return e}},offset:{order:200,enabled:!0,fn:G,offset:0},preventOverflow:{order:300,enabled:!0,fn:function(e,t){var o=t.boundariesElement||r(e.instance.popper);e.instance.reference===o&&(o=r(o));var i=y(e.instance.popper,e.instance.reference,t.padding,o);t.boundaries=i;var n=t.priority,p=e.offsets.popper,s={primary:function(e){var o=p[e];return p[e]<i[e]&&!t.escapeWithReference&&(o=J(p[e],i[e])),pe({},e,o)},secondary:function(e){var o='right'===e?'left':'top',n=p[o];return p[e]>i[e]&&!t.escapeWithReference&&(n=_(p[o],i[e]-('right'===e?p.width:p.height))),pe({},o,n)}};return n.forEach(function(e){var t=-1===['left','top'].indexOf(e)?'secondary':'primary';p=se({},p,s[t](e))}),e.offsets.popper=p,e},priority:['left','right','top','bottom'],padding:5,boundariesElement:'scrollParent'},keepTogether:{order:400,enabled:!0,fn:function(e){var t=e.offsets,o=t.popper,i=t.reference,n=e.placement.split('-')[0],r=X,p=-1!==['top','bottom'].indexOf(n),s=p?'right':'bottom',d=p?'left':'top',a=p?'width':'height';return o[s]<r(i[d])&&(e.offsets.popper[d]=r(i[d])-o[a]),o[d]>r(i[s])&&(e.offsets.popper[d]=r(i[s])),e}},arrow:{order:500,enabled:!0,fn:function(e,o){var i;if(!F(e.instance.modifiers,'arrow','keepTogether'))return e;var n=o.element;if('string'==typeof n){if(n=e.instance.popper.querySelector(n),!n)return e;}else if(!e.instance.popper.contains(n))return console.warn('WARNING: `arrow.element` must be child of its popper element!'),e;var 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le.COUNTERCLOCKWISE:p=q(i,!0);break;default:p=t.behavior;}return p.forEach(function(s,d){if(i!==s||p.length===d+1)return e;i=e.placement.split('-')[0],n=x(i);var a=e.offsets.popper,l=e.offsets.reference,f=X,m='left'===i&&f(a.right)>f(l.left)||'right'===i&&f(a.left)<f(l.right)||'top'===i&&f(a.bottom)>f(l.top)||'bottom'===i&&f(a.top)<f(l.bottom),h=f(a.left)<f(o.left),c=f(a.right)>f(o.right),g=f(a.top)<f(o.top),u=f(a.bottom)>f(o.bottom),b='left'===i&&h||'right'===i&&c||'top'===i&&g||'bottom'===i&&u,w=-1!==['top','bottom'].indexOf(i),y=!!t.flipVariations&&(w&&'start'===r&&h||w&&'end'===r&&c||!w&&'start'===r&&g||!w&&'end'===r&&u);(m||b||y)&&(e.flipped=!0,(m||b)&&(i=p[d+1]),y&&(r=K(r)),e.placement=i+(r?'-'+r:''),e.offsets.popper=se({},e.offsets.popper,S(e.instance.popper,e.offsets.reference,e.placement)),e=C(e.instance.modifiers,e,'flip'))}),e},behavior:'flip',padding:5,boundariesElement:'viewport'},inner:{order:700,enabled:!1,fn:function(e){var 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//# sourceMappingURL=popper.min.js.map
......@@ -3,154 +3,45 @@ var SELECTED_PACKAGES_COLOR = [];
var PREVIEW = "";
$( "#generateButton" ).click(function() {
function showPackage(distribName) {
var distrib = distribName;
if(distribName == "Distribution") {
distrib = document.getElementById("selectedOS").value;
var valid = true;
if(SELECTED_PACKAGES["Python"].length > 0 && document.getElementById("selectedPython").value == 0) {
alert("Please choose Python version");
valid = false;
}
var str = document.getElementById("find"+distribName+"Packages").value;
var limit = document.getElementById("limit"+distribName).value;
if (str == "") {
document.getElementById("containPackages"+distribName).innerHTML = "";
return;
} else {
if (window.XMLHttpRequest) {
xmlhttp = new XMLHttpRequest(); // code for IE7+, Firefox, Chrome, Opera, Safari
} else {
xmlhttp = new ActiveXObject("Microsoft.XMLHTTP"); // code for IE6, IE5
}
xmlhttp.onreadystatechange = function() {
if (this.readyState == 4 && this.status == 200) {
document.getElementById("containPackages"+distribName).innerHTML = this.responseText;
}
};
var patternName = document.getElementById("pattern"+distribName+"Name").checked;
var patternDescription = document.getElementById("pattern"+distribName+"Description").checked;
//xmlhttp.open("GET","get"+distribName+"Packages.php?distrib="+distrib+"&filter="+str+"&patternName="+patternName+"&patternDescription="+patternDescription+"&limit="+limit,true);
xmlhttp.open("GET","getPackages.php?distrib="+distrib+"&filter="+str+"&patternName="+patternName+"&patternDescription="+patternDescription+"&limit="+limit,true);
xmlhttp.send();
if(valid) {
var preview = generate_container();
$("#containerPreview").text(PREVIEW);
}
}
function generatePackageSelected(Pthis) {
var key = Pthis.dataset["psection"];
});
var data = [Pthis.dataset["pname"], Pthis.dataset["pversion"], key, Pthis.id];
if(key == "Distribution") {
data = [Pthis.dataset["pname"], Pthis.dataset["pversion"], document.getElementById("selectedOS").value, Pthis.id];
}
var newSelected = [];
function buildRecipe() {
if(Pthis.checked) {
var add = true;
for(var i = 0; i < SELECTED_PACKAGES[key].length; i++) {
if(SELECTED_PACKAGES[key][i][0] === Pthis.dataset["pname"]) {
add = false;
}
newSelected.push(SELECTED_PACKAGES[key][i]);
}
var filename = document.getElementById("imageNameInput").value;
if(add) {
newSelected.push(data);
}
var isSingularity = document.getElementById("singularityRadio").checked;
} else {
for(var i = 0; i < SELECTED_PACKAGES[key].length; i++) {
if (SELECTED_PACKAGES[key][i][0] === Pthis.dataset["pname"]) {
//nothing
if (filename === "") {
if (isSingularity) {
filename = "Singularity";
} else {
newSelected.push(SELECTED_PACKAGES[key][i]);
filename = "Dockerfile";
}
}
}
SELECTED_PACKAGES[key] = newSelected;
gestionPackageSelected();
}
function gestionPackageSelected() {
var result = "";
for (var key in SELECTED_PACKAGES) {
var tab = SELECTED_PACKAGES[key];
for(var i = 0; i < tab.length; i++) {
result = result + "<tr><td><button type='button' data-pname='"+ tab[i][0] +"' data-pid = '"+ tab[i][3] +"' data-psection = '"+ tab[i][2] +"' onclick='removePackageButton(this)' class='btn btn-danger btn-sm'>x</button></td><td style=\"text-align: center;\"><span class=\"badge\" style=\"background-color: "+ SELECTED_PACKAGES_COLOR[key] + "; color: #fff;\" >"+ tab[i][2] +"</span></td><td>"+ tab[i][0] +"<span class=\"badge\" style=\"background-color: #2f3640; color: #FFFFFF; margin-left: 10px\" >"+ tab[i][1] +"</span></td></tr>";
}
}
document.getElementById("TableSelectedPackages").innerHTML = result;
}
function removePackageButton(Pthis) {
var newSelected = [];
var key = Pthis.dataset["psection"];
if(key == document.getElementById("selectedOS").value) {
key = "Distribution";
}
for(var i = 0; i < SELECTED_PACKAGES[key].length; i++) {
if (SELECTED_PACKAGES[key][i][0] === Pthis.dataset["pname"]) {
//nothing
if(document.getElementById(Pthis.dataset["pid"])) {
document.getElementById(Pthis.dataset["pid"]).checked = false;
}
} else {
newSelected.push(SELECTED_PACKAGES[key][i]);
}
if (isSingularity) {
alert("sudo singularity build ./" + filename);
} else {
alert("sudo docker build ./" + filename);
}
SELECTED_PACKAGES[key] = newSelected;
gestionPackageSelected();
}
$( "#generateButton" ).click(function() {
if((SELECTED_PACKAGES["CRAN"].length > 0 || SELECTED_PACKAGES["Bioconductor"].length > 0 ) && document.getElementById("selectedR").value == 0) {
alert("Please choose R version");
}
else if(SELECTED_PACKAGES["Python"].length > 0 && document.getElementById("selectedPython").value == 0) {
alert("Please choose Python version");
}
else {
var preview = generate_container();
$("#containerPreview").text(PREVIEW);
}
});
function downloadFile2(name, value) {
var filename = name;
var isSingularity = document.getElementById("singularityRadio").checked;
var text = value;
var element = document.createElement('a');
element.setAttribute('href', 'data:text/plain;charset=utf-8,' + encodeURIComponent(text));
element.setAttribute('download', filename);
element.style.display = 'none';
document.body.appendChild(element);
element.click();
document.body.removeChild(element);
}
function downloadFile() {
......@@ -183,29 +74,26 @@ function downloadFile() {
}
}
function buildRecipe() {
var filename = document.getElementById("imageNameInput").value;
function downloadFile2(name, value) {
var filename = name;
var isSingularity = document.getElementById("singularityRadio").checked;
if (filename === "") {
if (isSingularity) {
filename = "Singularity";
} else {
filename = "Dockerfile";
}
}
var text = value;
var element = document.createElement('a');
element.setAttribute('href', 'data:text/plain;charset=utf-8,' + encodeURIComponent(text));
element.setAttribute('download', filename);
if (isSingularity) {
alert("sudo singularity build ./" + filename);
} else {
alert("sudo docker build ./" + filename);
}
element.style.display = 'none';
document.body.appendChild(element);
element.click();
document.body.removeChild(element);
}
function generate_container() {
PREVIEW = "";
......@@ -226,6 +114,8 @@ function generate_container() {
var pythonversion = document.getElementById("selectedPython").value;
var execline = document.getElementById("ExecLineInput").value;
var nrow = 2;
//HEADER
......@@ -583,19 +473,33 @@ function generate_container() {
nrow += 3;
//END
if(isSingularity) {
PREVIEW += "%apprun run\n";
PREVIEW += "\texec /bin/bash \"$@\"\n";
PREVIEW += "\n";
PREVIEW += "%runscript\n";
PREVIEW += "\texec /bin/bash \"$@\"\n";
PREVIEW += "\n";
nrow += 6;
} else {
PREVIEW += "CMD exec /bin/bash \"$@\"\n";
PREVIEW += "\n";
nrow += 2;
if(execline != "") {
if(isSingularity) {
PREVIEW += "%runscript\n";
PREVIEW += "\t"+execline.trim()+"\n";
PREVIEW += "\n";
nrow += 6;
} else {
PREVIEW += "CMD "+execline.trim()+"\n";
PREVIEW += "\n";
nrow += 2;
}
}
else {
if(isSingularity) {
PREVIEW += "%apprun run\n";
PREVIEW += "\texec /bin/bash \"$@\"\n";
PREVIEW += "\n";
PREVIEW += "%runscript\n";
PREVIEW += "\texec /bin/bash \"$@\"\n";
PREVIEW += "\n";
nrow += 6;
} else {
PREVIEW += "CMD exec /bin/bash \"$@\"\n";
PREVIEW += "\n";
nrow += 2;
}
}
......@@ -604,3 +508,149 @@ function generate_container() {
document.getElementById('containerPreview').focus();
}
function generatePackageSelected(Pthis) {
var key = Pthis.dataset["psection"];
var data = [Pthis.dataset["pname"], Pthis.dataset["pversion"], key, Pthis.id];
if(key == "Distribution") {
data = [Pthis.dataset["pname"], Pthis.dataset["pversion"], document.getElementById("selectedOS").value, Pthis.id];
}
var newSelected = [];
if(Pthis.checked) {
var add = true;
for(var i = 0; i < SELECTED_PACKAGES[key].length; i++) {
if(SELECTED_PACKAGES[key][i][0] === Pthis.dataset["pname"]) {
add = false;
}
newSelected.push(SELECTED_PACKAGES[key][i]);
}
if(add) {
newSelected.push(data);
}
} else {
for(var i = 0; i < SELECTED_PACKAGES[key].length; i++) {
if (SELECTED_PACKAGES[key][i][0] === Pthis.dataset["pname"]) {
//nothing
} else {
newSelected.push(SELECTED_PACKAGES[key][i]);
}
}
}
SELECTED_PACKAGES[key] = newSelected;
gestionPackageSelected();
}
function gestionPackageSelected() {
var result = "";
for (var key in SELECTED_PACKAGES) {
var tab = SELECTED_PACKAGES[key];
for(var i = 0; i < tab.length; i++) {
result = result + "<tr><td><button type='button' data-pname='"+ tab[i][0] +"' data-pid = '"+ tab[i][3] +"' data-psection = '"+ tab[i][2] +"' onclick='removePackageButton(this)' class='btn btn-danger btn-sm'>x</button></td><td style=\"text-align: center;\"><span class=\"badge\" style=\"background-color: "+ SELECTED_PACKAGES_COLOR[key] + "; color: #fff;\" >"+ tab[i][2] +"</span></td><td>"+ tab[i][0] +"<span class=\"badge\" style=\"background-color: #2f3640; color: #FFFFFF; margin-left: 10px\" >"+ tab[i][1] +"</span></td></tr>";
}
}
document.getElementById("TableSelectedPackages").innerHTML = result;
}
function removePackageButton(Pthis) {
var newSelected = [];
var key = Pthis.dataset["psection"];
if(key == document.getElementById("selectedOS").value) {
key = "Distribution";
}
for(var i = 0; i < SELECTED_PACKAGES[key].length; i++) {
if (SELECTED_PACKAGES[key][i][0] === Pthis.dataset["pname"]) {
//nothing
if(document.getElementById(Pthis.dataset["pid"])) {
document.getElementById(Pthis.dataset["pid"]).checked = false;
}
} else {
newSelected.push(SELECTED_PACKAGES[key][i]);
}
}
SELECTED_PACKAGES[key] = newSelected;
gestionPackageSelected();
}
function showFormContainer() {
if(PREVIEW !== "") {
var isSingularity = document.getElementById("singularityRadio").checked;
if(isSingularity) {
document.getElementById("typeContainer").value = "Singularity";
} else {
document.getElementById("typeContainer").value = "Docker";
}
document.getElementById("valueContainer").value = PREVIEW;
$('#modalSaveRecipe').modal();
} else {
alert("Generate once before publish file");
}
}
function showPackage(distribName) {
var distrib = distribName;