Commit 0a0e79e0 authored by julien veyssier's avatar julien veyssier
Browse files

use DEFAULT_REPOSITORY for update process

parent 751f620b
......@@ -726,7 +726,7 @@ if [[ "$SKIPINSTALLFLAG" == "0" ]]; then
biocLite("phyloseq", ask=FALSE, lib.loc=Sys.getenv("R_LIBS_USER"), suppressUpdates=TRUE)
biocLite("Rgraphviz", ask=FALSE, lib.loc=Sys.getenv("R_LIBS_USER"), suppressUpdates=TRUE)
biocLite("supraHex", ask=FALSE, lib.loc=Sys.getenv("R_LIBS_USER"), suppressUpdates=TRUE)
install.packages("mpoly",lib=Sys.getenv("R_LIBS_USER"),repos="http://cran.irsn.fr/")
install.packages("mpoly",lib=Sys.getenv("R_LIBS_USER"),repos="'$DEFAULT_REPOSITORY'")
' > $DESTINATION/update.R
$XVFBRUN_PATH -n 222 $RPATH CMD BATCH --slave --vanilla --quiet update.R
......
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