Commit bd73142e authored by khalid's avatar khalid
Browse files

Force the order of transcripts in /tmp/ALL_transcripts.*

parent 646f8aec
......@@ -42,7 +42,12 @@ done
# regroup all samples
cat $out/*.fasta_mod > $out/ALL_transcripts.fasta
cat $out/*.suspects > $out/ALL_transcripts.suspects
cat $out/*.fasta_suspect > $out/ALL_transcripts.fasta_suspects
echo '' > $out/ALL_transcripts.fasta
echo '' > $out/ALL_transcripts.suspects
echo '' > $out/ALL_transcripts.fasta_suspects
for ref in "${orders[@]}"; do
cat $out/$ref.fasta_mod >> $out/ALL_transcripts.fasta
cat $out/$ref.suspects >> $out/ALL_transcripts.suspects
cat $out/$ref.fasta_suspect >> $out/ALL_transcripts.fasta_suspects
done
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