for (i in ctg) {if (totRPK > 0) {print i, (ctg[i]/ctgsize[i])*(1/totRPK)*1000000 } else {print i,"0"}} }'>$fileout
;;
K)if[$MODE=="u"]
then
if[$FRAGLENGTH=='none']||[$FRAGSD=='none'];then
echo-e"\nWarning : When using unpaired data with Kallisto, you need to specify mean fragment length and fragment length standard deviation (--frag-length and --frag-sd options)"
echo-e"\nWarning : When using unpaired data with Kallisto, you need to specify mean fragment length and fragment length standard deviation (--frag-length and --frag-sd options)"