README.md 1.91 KB
Newer Older
khalid's avatar
khalid committed
1
2
3
4
This project is aimed at providing a list of "Ethical' journals where ISEM's researchers are used to publishing there works.
  
The most important files are :

khalid's avatar
khalid committed
5
6
7
8
9
* **bd_biblio_1220.csv**  : 

this file contain all the references (books, journals ...) as extracted from ISEM web site by Carole Smadja
* **articles_ISEM.csv** : 

khalid's avatar
khalid committed
10
this file is derived by :  `awk 'BEGIN{FS="\t"} {if($2=="Article"){print} }' bd_biblio_1220.csv > articles_ISEM.csv`  
khalid's avatar
khalid committed
11

khalid's avatar
khalid committed
12
13
14
* **ethical_journals.csv** : 

is a liste of "Ethical" journals mainained by Nicolas Galtier containing informations on a selected journals among those where ISEM researchers published their works.
khalid's avatar
khalid committed
15
16
17
18
19
20
21
22
23
24
25
26
27
28

* **acad_journal_synonyms.tsv** :

Synonymous names for some DAFNEE journals (in ethical_journals.csv)


* **annotated_journals.tsv** :

This is the current list of all annotated journals (where ISEM authors published from 2014 + some others)

* **nonacad_journal_synonyms.tsv** :

Synonymous names for some non DAFNEE journals

khalid's avatar
khalid committed
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
* **liste_personnel_ISEM_260321.csv** 

is a list of ISEM staff extracted from the web site by Carole Smadja
* **parseISEM_articles.sh** 

is a helper bash script that extract for each ISEM member a list of papers where he/she have contributed
* **liste_Papers_personnel_publiant.tsv** 

is a result of parseISEM_articles.sh listing the ISEM paper by author.
* **bibEthic.Rmd** : 

an Rmakdown script to help generate an autonomous html file with a datatable from ethical_journals.csv records. 
* **bibEthic.html** : 

generated by `Rscript -e "rmarkdown::render('bibEthic.Rmd',output_format='html_document')" ` 
* **app.R** 

This is a shiny application wrapping the content of ethical_journals.csv and liste_Papers_personnel_publiant.tsv. 

remy's avatar
remy committed
48
run : `Rscript -e 'shiny::runApp(".", port=8787)' `
khalid's avatar
khalid committed
49

khalid's avatar
khalid committed
50
51
52
53
54
55
Open the url : 127.0.0.1:8787


* *Output* : 

this directory contains a subset of "ethical" journals that have data in pubmed. (i.e. informations on papers they published since 2005.)
khalid's avatar
khalid committed
56
57
58