Add a script for local deployment

deployLocal.sh

+#!/bin/bash
+#This script will help a deployment of a docker image on an MBB bigmem machine
+
+if [ $# -lt 2 ]
+then
+  echo usage : $0 dataDir resultsDir '[dockerHub|local]'
+  exit
+fi
+
+#essayer une plage de ports entre 8787 et 8800
+#APP_PORT=$2 
+APP_PORT=8787
+while [[ $(ss -tulw | grep $APP_PORT) != "" && $APP_PORT < 8800 ]]
+do
+  APP_PORT=$(( $APP_PORT + 1))
+done
+
+if [[ $(ss -tulw | grep $APP_PORT) != "" ]]
+then
+  echo "No tcp port available !!"
+  exit -1
+fi
+
+# Docker volumes
+# MBB Workflows reads data from /Data and write results to /Results
+
+if [ $SUDO_USER ]; then realUSER=$SUDO_USER; else realUSER=`whoami`; fi
+
+Data=$1
+Results=$2
+
+mkdir -p $Data
+mkdir -p $Results
+
+DOCK_VOL+=" --mount type=bind,src=$Data,dst=/Data"
+DOCK_VOL+=" --mount type=bind,src=$Results,dst=/Results"
+
+if [ $# -lt 3 ]
+then
+    APP_IMG="mbbteam/radseqref:latest"  
+else 
+    IMG_SRC=$3
+    case $IMG_SRC in
+        dockerHub )
+            APP_IMG="mbbteam/radseqref:latest"  ;;
+        local)
+            docker build . -t radseqref:latest 
+            APP_IMG="radseqref:latest" ;;
+        mbb)    
+            #APP_IMG="X.X.X.X:5000/radseqref:latest" ;;
+    esac
+fi
+
+CONTAINER_ID=$( docker run --rm -d -p $APP_PORT:3838 $DOCK_VOL $APP_IMG )
+if [ $CONTAINER_ID ]
+then
+    echo " "
+    echo You have to put your Data on  : $1
+    echo " "
+    echo Results will be written to    : $2
+    echo " "
+    hostname -I | grep -E -o "162.38.181.[0-9]{1,3}" | awk -v port=$APP_PORT '{print "You can access the workflow interface at :  http://"$1":"port}'
+    echo " "
+    echo To start a Bash session inside the container : docker exec -it $CONTAINER_ID /bin/bash
+else
+    echo Failed to run the docker container  !!
+fi