debug SAMPLES access

files/Snakefile

@@ -16,15 +16,6 @@ OUTPUTS = config["outputs"]
 PARAMS_INFO = config["params_info"]
 config = config["params"]
 
-def get_individus():
-    if (config["demultiplexing"] == "null"):
-        return SAMPLES
-    else:
-        with open(config["process_radtags_barcode_file"], mode="r") as infile:
-            reader = csv.reader(infile,delimiter='\t')
-            return [row[-1] for row in reader]
-
-individus = get_individus()
 
 ##########
 # Inputs #
@@ -35,6 +26,16 @@ raw_reads = raw_reads(config['results_dir'], config['sample_dir'], config['SeOrP
 config.update(raw_reads)
 SAMPLES = raw_reads['samples']
 
+def get_individus():
+    if (config["demultiplexing"] == "null"):
+        return SAMPLES
+    else:
+        with open(config["process_radtags_barcode_file"], mode="r") as infile:
+            reader = csv.reader(infile,delimiter='\t')
+            return [row[-1] for row in reader]
+
+individus = get_individus()
+
 ## get reads
 def reads():
     inputs = dict()