Skip to content
GitLab
Menu
Projects
Groups
Snippets
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
khalid
radsex
Commits
7a8bae01
Commit
7a8bae01
authored
Jan 21, 2019
by
Romain Feron
Browse files
Added header for depth output file
parent
a0272060
Changes
2
Hide whitespace changes
Inline
Side-by-side
RadSex.pro
View file @
7a8bae01
...
...
@@ -40,7 +40,8 @@ SOURCES += main.cpp \
include
/
bwa
/
QSufSort
.
c
\
include
/
bwa
/
rle
.
c
\
include
/
bwa
/
rope
.
c
\
include
/
bwa
/
utils
.
c
include
/
bwa
/
utils
.
c
\
src
/
depth
.
cpp
HEADERS
+=
\
include
/
bwa
/
bntseq
.
h
\
...
...
@@ -80,4 +81,5 @@ HEADERS += \
src
/
significant_sequences
.
h
\
src
/
stats
.
h
\
src
/
subset
.
h
\
src
/
utils
.
h
src
/
utils
.
h
\
src
/
depth
.
h
src/depth.cpp
View file @
7a8bae01
...
...
@@ -79,6 +79,8 @@ void depth(Parameters& parameters) {
if
(
output_file
.
is_open
())
{
output_file
<<
"Individual
\t
Sex
\t
Markers
\n
"
;
for
(
auto
i
:
individual_depths
)
{
output_file
<<
i
.
first
<<
"
\t
"
;
(
popmap
[
i
.
first
])
?
output_file
<<
"M"
:
output_file
<<
"F"
;
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment