Skip to content
GitLab
Menu
Projects
Groups
Snippets
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
khalid
radsex
Commits
7fa05cc1
Commit
7fa05cc1
authored
Apr 22, 2020
by
RomainFeron
Browse files
minor makefile typo
parent
3e85c5b0
Changes
1
Hide whitespace changes
Inline
Side-by-side
Makefile
View file @
7fa05cc1
...
...
@@ -6,7 +6,7 @@ CXXFLAGS += -Wall -std=c++11 $(OPTCXXFLAGS)
CFLAGS
+=
-Wall
-Wno-maybe-uninitialized
LDFLAGS
+=
-pthread
-lstdc
++
-lz
-L
$(INCLUDE)
/bwa
-lbwa
# Directory organi
s
ation
# Directory organi
z
ation
BASEDIR
=
.
BIN
=
$(BASEDIR)
/bin
BUILD
=
$(BASEDIR)
/build
...
...
@@ -61,7 +61,7 @@ $(INCLUDE)/kfun/kfun.o: $(INCLUDE)/kfun/kfun.cpp
clean-kfun
:
(
rm
$(INCLUDE)
/kfun/kfun.o
)
# Clean
RADS
ex files
# Clean
rads
ex files
clean
:
rm
-rf
$(BUILD)
/
*
.o
rm
-rf
$(BIN)
/
*
...
...
@@ -69,12 +69,12 @@ clean:
# Clean all files
clean-all
:
clean clean-bwa clean-kfun
# Rebuild
RADS
ex only
# Rebuild
rads
ex only
rebuild
:
$(MAKE)
clean
$(MAKE)
-j
$(JOBS)
# Rebuild
RADS
ex and dependencies
# Rebuild
rads
ex and dependencies
rebuild-all
:
$(MAKE)
clean-all
$(MAKE)
-j
$(JOBS)
...
...
@@ -87,7 +87,7 @@ $(BIN)/radsex: $(OBJS) $(INCLUDE)/kfun/kfun.o
$(BUILD)/%.o
:
$(SRC)/%.cpp $(INCLUDE)/bwa/libbwa.a
$(CXX)
$(CXXFLAGS)
-I
$(INCLUDE)
-c
-o
$@
$<
# Build doc with
sphinx and
doxygen
# Build doc with doxygen
docs
:
(
cd
docs
&&
make
)
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment