Updated docs and added a redirection index for github pages

docs/html/marker_8h_source.html

@@ -5,7 +5,7 @@
 <meta http-equiv="X-UA-Compatible" content="IE=9"/>
 <meta name="generator" content="Doxygen 1.8.17"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
-<title>RADSex: /home/romain/work/code/RADSex/src/marker.h Source File</title>
+<title>RADSex: /home/romain/work/code/radsex/src/marker.h Source File</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>

docs/html/markers__table_8cpp.html

@@ -5,7 +5,7 @@
 <meta http-equiv="X-UA-Compatible" content="IE=9"/>
 <meta name="generator" content="Doxygen 1.8.17"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
-<title>RADSex: /home/romain/work/code/RADSex/src/markers_table.cpp File Reference</title>
+<title>RADSex: /home/romain/work/code/radsex/src/markers_table.cpp File Reference</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>

docs/html/markers__table_8cpp_source.html

@@ -5,7 +5,7 @@
 <meta http-equiv="X-UA-Compatible" content="IE=9"/>
 <meta name="generator" content="Doxygen 1.8.17"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
-<title>RADSex: /home/romain/work/code/RADSex/src/markers_table.cpp Source File</title>
+<title>RADSex: /home/romain/work/code/radsex/src/markers_table.cpp Source File</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>
@@ -296,7 +296,7 @@ $(document).ready(function(){initNavTree('markers__table_8cpp_source.html','');
 <div class="line"><a name="l00212"></a><span class="lineno">  212</span>&#160; </div>
 <div class="line"><a name="l00213"></a><span class="lineno">  213</span>&#160;    this-&gt;<a class="code" href="classMarkersTable.html#aaa797d9ad11ca87e29eb96eca6ad2837">mutex</a>.lock();</div>
 <div class="line"><a name="l00214"></a><span class="lineno">  214</span>&#160; </div>
-<div class="line"><a name="l00215"></a><span class="lineno">  215</span>&#160;    ulong batch_size_real = std::min(<a class="code" href="markers__table_8h.html#a9ae2958e436c566413867028fc829ec0">BATCH_SIZE</a>, <span class="keyword">static_cast&lt;</span><span class="keywordtype">int</span><span class="keyword">&gt;</span>(this-&gt;<a class="code" href="classMarkersTable.html#a169656fd6d7d040836f0efc39407fe6f">markers_queue</a>.size()));</div>
+<div class="line"><a name="l00215"></a><span class="lineno">  215</span>&#160;    <span class="keywordtype">unsigned</span> <span class="keywordtype">long</span> batch_size_real = std::min(<a class="code" href="markers__table_8h.html#a9ae2958e436c566413867028fc829ec0">BATCH_SIZE</a>, <span class="keyword">static_cast&lt;</span><span class="keywordtype">int</span><span class="keyword">&gt;</span>(this-&gt;<a class="code" href="classMarkersTable.html#a169656fd6d7d040836f0efc39407fe6f">markers_queue</a>.size()));</div>
 <div class="line"><a name="l00216"></a><span class="lineno">  216</span>&#160;    batch.resize(batch_size_real);</div>
 <div class="line"><a name="l00217"></a><span class="lineno">  217</span>&#160; </div>
 <div class="line"><a name="l00218"></a><span class="lineno">  218</span>&#160;    <span class="keywordflow">if</span> (batch_size_real &gt; 0) {</div>

docs/html/markers__table_8h.html

@@ -5,7 +5,7 @@
 <meta http-equiv="X-UA-Compatible" content="IE=9"/>
 <meta name="generator" content="Doxygen 1.8.17"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
-<title>RADSex: /home/romain/work/code/RADSex/src/markers_table.h File Reference</title>
+<title>RADSex: /home/romain/work/code/radsex/src/markers_table.h File Reference</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>

docs/html/markers__table_8h_source.html

@@ -5,7 +5,7 @@
 <meta http-equiv="X-UA-Compatible" content="IE=9"/>
 <meta name="generator" content="Doxygen 1.8.17"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
-<title>RADSex: /home/romain/work/code/RADSex/src/markers_table.h Source File</title>
+<title>RADSex: /home/romain/work/code/radsex/src/markers_table.h Source File</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>

docs/html/parameters_8h.html

@@ -5,7 +5,7 @@
 <meta http-equiv="X-UA-Compatible" content="IE=9"/>
 <meta name="generator" content="Doxygen 1.8.17"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
-<title>RADSex: /home/romain/work/code/RADSex/src/parameters.h File Reference</title>
+<title>RADSex: /home/romain/work/code/radsex/src/parameters.h File Reference</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>

docs/html/parameters_8h_source.html

@@ -5,7 +5,7 @@
 <meta http-equiv="X-UA-Compatible" content="IE=9"/>
 <meta name="generator" content="Doxygen 1.8.17"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
-<title>RADSex: /home/romain/work/code/RADSex/src/parameters.h Source File</title>
+<title>RADSex: /home/romain/work/code/radsex/src/parameters.h Source File</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>

docs/html/popmap_8cpp.html

@@ -5,7 +5,7 @@
 <meta http-equiv="X-UA-Compatible" content="IE=9"/>
 <meta name="generator" content="Doxygen 1.8.17"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
-<title>RADSex: /home/romain/work/code/RADSex/src/popmap.cpp File Reference</title>
+<title>RADSex: /home/romain/work/code/radsex/src/popmap.cpp File Reference</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>

docs/html/popmap_8cpp_source.html

@@ -5,7 +5,7 @@
 <meta http-equiv="X-UA-Compatible" content="IE=9"/>
 <meta name="generator" content="Doxygen 1.8.17"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
-<title>RADSex: /home/romain/work/code/RADSex/src/popmap.cpp Source File</title>
+<title>RADSex: /home/romain/work/code/radsex/src/popmap.cpp Source File</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>

docs/html/popmap_8h.html

@@ -5,7 +5,7 @@
 <meta http-equiv="X-UA-Compatible" content="IE=9"/>
 <meta name="generator" content="Doxygen 1.8.17"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
-<title>RADSex: /home/romain/work/code/RADSex/src/popmap.h File Reference</title>
+<title>RADSex: /home/romain/work/code/radsex/src/popmap.h File Reference</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>

docs/html/popmap_8h_source.html

@@ -5,7 +5,7 @@
 <meta http-equiv="X-UA-Compatible" content="IE=9"/>
 <meta name="generator" content="Doxygen 1.8.17"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
-<title>RADSex: /home/romain/work/code/RADSex/src/popmap.h Source File</title>
+<title>RADSex: /home/romain/work/code/radsex/src/popmap.h Source File</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>

docs/html/process_8cpp.html

@@ -5,7 +5,7 @@
 <meta http-equiv="X-UA-Compatible" content="IE=9"/>
 <meta name="generator" content="Doxygen 1.8.17"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
-<title>RADSex: /home/romain/work/code/RADSex/src/process.cpp File Reference</title>
+<title>RADSex: /home/romain/work/code/radsex/src/process.cpp File Reference</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>

docs/html/process_8cpp_source.html

@@ -5,7 +5,7 @@
 <meta http-equiv="X-UA-Compatible" content="IE=9"/>
 <meta name="generator" content="Doxygen 1.8.17"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
-<title>RADSex: /home/romain/work/code/RADSex/src/process.cpp Source File</title>
+<title>RADSex: /home/romain/work/code/radsex/src/process.cpp Source File</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>

docs/html/process_8h.html

@@ -5,7 +5,7 @@
 <meta http-equiv="X-UA-Compatible" content="IE=9"/>
 <meta name="generator" content="Doxygen 1.8.17"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
-<title>RADSex: /home/romain/work/code/RADSex/src/process.h File Reference</title>
+<title>RADSex: /home/romain/work/code/radsex/src/process.h File Reference</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>

docs/html/process_8h_source.html

@@ -5,7 +5,7 @@
 <meta http-equiv="X-UA-Compatible" content="IE=9"/>
 <meta name="generator" content="Doxygen 1.8.17"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
-<title>RADSex: /home/romain/work/code/RADSex/src/process.h Source File</title>
+<title>RADSex: /home/romain/work/code/radsex/src/process.h Source File</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>

docs/html/signif_8cpp.html

@@ -5,7 +5,7 @@
 <meta http-equiv="X-UA-Compatible" content="IE=9"/>
 <meta name="generator" content="Doxygen 1.8.17"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
-<title>RADSex: /home/romain/work/code/RADSex/src/signif.cpp File Reference</title>
+<title>RADSex: /home/romain/work/code/radsex/src/signif.cpp File Reference</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>

docs/html/signif_8cpp_source.html

@@ -5,7 +5,7 @@
 <meta http-equiv="X-UA-Compatible" content="IE=9"/>
 <meta name="generator" content="Doxygen 1.8.17"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
-<title>RADSex: /home/romain/work/code/RADSex/src/signif.cpp Source File</title>
+<title>RADSex: /home/romain/work/code/radsex/src/signif.cpp Source File</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>

docs/html/signif_8h.html

@@ -5,7 +5,7 @@
 <meta http-equiv="X-UA-Compatible" content="IE=9"/>
 <meta name="generator" content="Doxygen 1.8.17"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
-<title>RADSex: /home/romain/work/code/RADSex/src/signif.h File Reference</title>
+<title>RADSex: /home/romain/work/code/radsex/src/signif.h File Reference</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>

docs/html/signif_8h_source.html

@@ -5,7 +5,7 @@
 <meta http-equiv="X-UA-Compatible" content="IE=9"/>
 <meta name="generator" content="Doxygen 1.8.17"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
-<title>RADSex: /home/romain/work/code/RADSex/src/signif.h Source File</title>
+<title>RADSex: /home/romain/work/code/radsex/src/signif.h Source File</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>

docs/html/stats_8cpp.html

@@ -5,7 +5,7 @@
 <meta http-equiv="X-UA-Compatible" content="IE=9"/>
 <meta name="generator" content="Doxygen 1.8.17"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
-<title>RADSex: /home/romain/work/code/RADSex/src/stats.cpp File Reference</title>
+<title>RADSex: /home/romain/work/code/radsex/src/stats.cpp File Reference</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>