Updated docs and added a redirection index for github pages

docs/html/stats_8cpp_source.html

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 <meta http-equiv="X-UA-Compatible" content="IE=9"/>
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 <meta name="viewport" content="width=device-width, initial-scale=1"/>
-<title>RADSex: /home/romain/work/code/RADSex/src/stats.cpp Source File</title>
+<title>RADSex: /home/romain/work/code/radsex/src/stats.cpp Source File</title>
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docs/html/stats_8h.html

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 <meta http-equiv="X-UA-Compatible" content="IE=9"/>
 <meta name="generator" content="Doxygen 1.8.17"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
-<title>RADSex: /home/romain/work/code/RADSex/src/stats.h File Reference</title>
+<title>RADSex: /home/romain/work/code/radsex/src/stats.h File Reference</title>
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 <script type="text/javascript" src="jquery.js"></script>
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docs/html/stats_8h_source.html

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 <meta http-equiv="X-UA-Compatible" content="IE=9"/>
 <meta name="generator" content="Doxygen 1.8.17"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
-<title>RADSex: /home/romain/work/code/RADSex/src/stats.h Source File</title>
+<title>RADSex: /home/romain/work/code/radsex/src/stats.h Source File</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
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docs/html/structAlignedMarker.html

@@ -125,7 +125,7 @@ double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="st
 
 <p class="definition">Definition at line <a class="el" href="map_8h_source.html#l00045">45</a> of file <a class="el" href="map_8h_source.html">map.h</a>.</p>
 </div><hr/>The documentation for this struct was generated from the following file:<ul>
-<li>/home/romain/work/code/RADSex/src/<a class="el" href="map_8h_source.html">map.h</a></li>
+<li>/home/romain/work/code/radsex/src/<a class="el" href="map_8h_source.html">map.h</a></li>
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docs/html/structDepthResults.html

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 <hr/>The documentation for this struct was generated from the following file:<ul>
-<li>/home/romain/work/code/RADSex/src/<a class="el" href="depth_8h_source.html">depth.h</a></li>
+<li>/home/romain/work/code/radsex/src/<a class="el" href="depth_8h_source.html">depth.h</a></li>
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docs/html/structDistribResults.html

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 <p class="definition">Definition at line <a class="el" href="distrib_8h_source.html#l00043">43</a> of file <a class="el" href="distrib_8h_source.html">distrib.h</a>.</p>
 </div><hr/>The documentation for this struct was generated from the following file:<ul>
-<li>/home/romain/work/code/RADSex/src/<a class="el" href="distrib_8h_source.html">distrib.h</a></li>
+<li>/home/romain/work/code/radsex/src/<a class="el" href="distrib_8h_source.html">distrib.h</a></li>
 </ul>
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docs/html/structInputFile.html

@@ -121,7 +121,7 @@ bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="stru
 
 <p class="definition">Definition at line <a class="el" href="process_8h_source.html#l00046">46</a> of file <a class="el" href="process_8h_source.html">process.h</a>.</p>
 </div><hr/>The documentation for this struct was generated from the following file:<ul>
-<li>/home/romain/work/code/RADSex/src/<a class="el" href="process_8h_source.html">process.h</a></li>
+<li>/home/romain/work/code/radsex/src/<a class="el" href="process_8h_source.html">process.h</a></li>
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docs/html/structMapResults.html

@@ -113,7 +113,7 @@ uint64_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="
 
 <p class="definition">Definition at line <a class="el" href="map_8h_source.html#l00062">62</a> of file <a class="el" href="map_8h_source.html">map.h</a>.</p>
 </div><hr/>The documentation for this struct was generated from the following file:<ul>
-<li>/home/romain/work/code/RADSex/src/<a class="el" href="map_8h_source.html">map.h</a></li>
+<li>/home/romain/work/code/radsex/src/<a class="el" href="map_8h_source.html">map.h</a></li>
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docs/html/structParameters.html

@@ -201,7 +201,7 @@ float&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="str
 
 <p class="definition">Definition at line <a class="el" href="parameters_8h_source.html#l00035">35</a> of file <a class="el" href="parameters_8h_source.html">parameters.h</a>.</p>
 </div><hr/>The documentation for this struct was generated from the following file:<ul>
-<li>/home/romain/work/code/RADSex/src/<a class="el" href="parameters_8h_source.html">parameters.h</a></li>
+<li>/home/romain/work/code/radsex/src/<a class="el" href="parameters_8h_source.html">parameters.h</a></li>
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docs/html/structSignifResults.html

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 <p class="definition">Definition at line <a class="el" href="signif_8h_source.html#l00043">43</a> of file <a class="el" href="signif_8h_source.html">signif.h</a>.</p>
 </div><hr/>The documentation for this struct was generated from the following file:<ul>
-<li>/home/romain/work/code/RADSex/src/<a class="el" href="signif_8h_source.html">signif.h</a></li>
+<li>/home/romain/work/code/radsex/src/<a class="el" href="signif_8h_source.html">signif.h</a></li>
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docs/html/structSubsetResults.html

@@ -113,7 +113,7 @@ uint64_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="
 
 <p class="definition">Definition at line <a class="el" href="subset_8h_source.html#l00043">43</a> of file <a class="el" href="subset_8h_source.html">subset.h</a>.</p>
 </div><hr/>The documentation for this struct was generated from the following file:<ul>
-<li>/home/romain/work/code/RADSex/src/<a class="el" href="subset_8h_source.html">subset.h</a></li>
+<li>/home/romain/work/code/radsex/src/<a class="el" href="subset_8h_source.html">subset.h</a></li>
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docs/html/subset_8cpp.html

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 <meta name="viewport" content="width=device-width, initial-scale=1"/>
-<title>RADSex: /home/romain/work/code/RADSex/src/subset.cpp File Reference</title>
+<title>RADSex: /home/romain/work/code/radsex/src/subset.cpp File Reference</title>
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docs/html/subset_8cpp_source.html

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 <meta http-equiv="X-UA-Compatible" content="IE=9"/>
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-<title>RADSex: /home/romain/work/code/RADSex/src/subset.cpp Source File</title>
+<title>RADSex: /home/romain/work/code/radsex/src/subset.cpp Source File</title>
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docs/html/subset_8h.html

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-<title>RADSex: /home/romain/work/code/RADSex/src/subset.h File Reference</title>
+<title>RADSex: /home/romain/work/code/radsex/src/subset.h File Reference</title>
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docs/html/subset_8h_source.html

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-<title>RADSex: /home/romain/work/code/RADSex/src/subset.h Source File</title>
+<title>RADSex: /home/romain/work/code/radsex/src/subset.h Source File</title>
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docs/html/utils_8h.html

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-<title>RADSex: /home/romain/work/code/RADSex/src/utils.h File Reference</title>
+<title>RADSex: /home/romain/work/code/radsex/src/utils.h File Reference</title>
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docs/html/utils_8h_source.html

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-<title>RADSex: /home/romain/work/code/RADSex/src/utils.h Source File</title>
+<title>RADSex: /home/romain/work/code/radsex/src/utils.h Source File</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>

docs/index.html

+<meta http-equiv="refresh" content="0; url=./html/index.html" />