Commit 87cd8a3b authored by RomainFeron's avatar RomainFeron
Browse files

Updated docs and added a redirection index for github pages

parent 7fa05cc1
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<title>RADSex: /home/romain/work/code/RADSex/src/analysis.cpp File Reference</title> <title>RADSex: /home/romain/work/code/radsex/src/analysis.cpp File Reference</title>
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<meta http-equiv="X-UA-Compatible" content="IE=9"/> <meta http-equiv="X-UA-Compatible" content="IE=9"/>
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<title>RADSex: /home/romain/work/code/RADSex/src/analysis.cpp Source File</title> <title>RADSex: /home/romain/work/code/radsex/src/analysis.cpp Source File</title>
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<meta http-equiv="X-UA-Compatible" content="IE=9"/> <meta http-equiv="X-UA-Compatible" content="IE=9"/>
<meta name="generator" content="Doxygen 1.8.17"/> <meta name="generator" content="Doxygen 1.8.17"/>
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<title>RADSex: /home/romain/work/code/RADSex/src/analysis.h File Reference</title> <title>RADSex: /home/romain/work/code/radsex/src/analysis.h File Reference</title>
<link href="tabs.css" rel="stylesheet" type="text/css"/> <link href="tabs.css" rel="stylesheet" type="text/css"/>
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<meta http-equiv="X-UA-Compatible" content="IE=9"/> <meta http-equiv="X-UA-Compatible" content="IE=9"/>
<meta name="generator" content="Doxygen 1.8.17"/> <meta name="generator" content="Doxygen 1.8.17"/>
<meta name="viewport" content="width=device-width, initial-scale=1"/> <meta name="viewport" content="width=device-width, initial-scale=1"/>
<title>RADSex: /home/romain/work/code/RADSex/src/analysis.h Source File</title> <title>RADSex: /home/romain/work/code/radsex/src/analysis.h Source File</title>
<link href="tabs.css" rel="stylesheet" type="text/css"/> <link href="tabs.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="jquery.js"></script> <script type="text/javascript" src="jquery.js"></script>
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<meta http-equiv="X-UA-Compatible" content="IE=9"/> <meta http-equiv="X-UA-Compatible" content="IE=9"/>
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<meta name="viewport" content="width=device-width, initial-scale=1"/> <meta name="viewport" content="width=device-width, initial-scale=1"/>
<title>RADSex: /home/romain/work/code/RADSex/src/arg_parser.h File Reference</title> <title>RADSex: /home/romain/work/code/radsex/src/arg_parser.h File Reference</title>
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<meta http-equiv="X-UA-Compatible" content="IE=9"/> <meta http-equiv="X-UA-Compatible" content="IE=9"/>
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<title>RADSex: /home/romain/work/code/RADSex/src/arg_parser.h Source File</title> <title>RADSex: /home/romain/work/code/radsex/src/arg_parser.h Source File</title>
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...@@ -481,8 +481,8 @@ Wait if queue is empty and update progress bar with processed markers. </p> ...@@ -481,8 +481,8 @@ Wait if queue is empty and update progress bar with processed markers. </p>
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<hr/>The documentation for this class was generated from the following files:<ul> <hr/>The documentation for this class was generated from the following files:<ul>
<li>/home/romain/work/code/RADSex/src/<a class="el" href="analysis_8h_source.html">analysis.h</a></li> <li>/home/romain/work/code/radsex/src/<a class="el" href="analysis_8h_source.html">analysis.h</a></li>
<li>/home/romain/work/code/RADSex/src/<a class="el" href="analysis_8cpp_source.html">analysis.cpp</a></li> <li>/home/romain/work/code/radsex/src/<a class="el" href="analysis_8cpp_source.html">analysis.cpp</a></li>
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...@@ -250,7 +250,7 @@ uint&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="clas ...@@ -250,7 +250,7 @@ uint&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="clas
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<hr/>The documentation for this class was generated from the following file:<ul> <hr/>The documentation for this class was generated from the following file:<ul>
<li>/home/romain/work/code/RADSex/src/<a class="el" href="arg__parser_8h_source.html">arg_parser.h</a></li> <li>/home/romain/work/code/radsex/src/<a class="el" href="arg__parser_8h_source.html">arg_parser.h</a></li>
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...@@ -332,8 +332,8 @@ Individual | Group | Reads | Markers | Retained | Min_depth | Max_depth | Median ...@@ -332,8 +332,8 @@ Individual | Group | Reads | Markers | Retained | Min_depth | Max_depth | Median
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<hr/>The documentation for this class was generated from the following files:<ul> <hr/>The documentation for this class was generated from the following files:<ul>
<li>/home/romain/work/code/RADSex/src/<a class="el" href="depth_8h_source.html">depth.h</a></li> <li>/home/romain/work/code/radsex/src/<a class="el" href="depth_8h_source.html">depth.h</a></li>
<li>/home/romain/work/code/RADSex/src/<a class="el" href="depth_8cpp_source.html">depth.cpp</a></li> <li>/home/romain/work/code/radsex/src/<a class="el" href="depth_8cpp_source.html">depth.cpp</a></li>
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...@@ -339,8 +339,8 @@ Group1 | Group2 | Markers | P | P corrected | <a class="el" href="classSignif.ht ...@@ -339,8 +339,8 @@ Group1 | Group2 | Markers | P | P corrected | <a class="el" href="classSignif.ht
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<hr/>The documentation for this class was generated from the following files:<ul> <hr/>The documentation for this class was generated from the following files:<ul>
<li>/home/romain/work/code/RADSex/src/<a class="el" href="distrib_8h_source.html">distrib.h</a></li> <li>/home/romain/work/code/radsex/src/<a class="el" href="distrib_8h_source.html">distrib.h</a></li>
<li>/home/romain/work/code/RADSex/src/<a class="el" href="distrib_8cpp_source.html">distrib.cpp</a></li> <li>/home/romain/work/code/radsex/src/<a class="el" href="distrib_8cpp_source.html">distrib.cpp</a></li>
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...@@ -330,8 +330,8 @@ Frequency | Count </p> ...@@ -330,8 +330,8 @@ Frequency | Count </p>
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<hr/>The documentation for this class was generated from the following files:<ul> <hr/>The documentation for this class was generated from the following files:<ul>
<li>/home/romain/work/code/RADSex/src/<a class="el" href="freq_8h_source.html">freq.h</a></li> <li>/home/romain/work/code/radsex/src/<a class="el" href="freq_8h_source.html">freq.h</a></li>
<li>/home/romain/work/code/RADSex/src/<a class="el" href="freq_8cpp_source.html">freq.cpp</a></li> <li>/home/romain/work/code/radsex/src/<a class="el" href="freq_8cpp_source.html">freq.cpp</a></li>
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...@@ -158,8 +158,8 @@ std::vector&lt; std::string &gt;&#160;</td><td class="memItemRight" valign="bott ...@@ -158,8 +158,8 @@ std::vector&lt; std::string &gt;&#160;</td><td class="memItemRight" valign="bott
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<hr/>The documentation for this class was generated from the following files:<ul> <hr/>The documentation for this class was generated from the following files:<ul>
<li>/home/romain/work/code/RADSex/src/<a class="el" href="markers__table_8h_source.html">markers_table.h</a></li> <li>/home/romain/work/code/radsex/src/<a class="el" href="markers__table_8h_source.html">markers_table.h</a></li>
<li>/home/romain/work/code/RADSex/src/<a class="el" href="markers__table_8cpp_source.html">markers_table.cpp</a></li> <li>/home/romain/work/code/radsex/src/<a class="el" href="markers__table_8cpp_source.html">markers_table.cpp</a></li>
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...@@ -485,8 +485,8 @@ Contig | Position | Length | Marker_id | Bias | P | <a class="el" href="classSig ...@@ -485,8 +485,8 @@ Contig | Position | Length | Marker_id | Bias | P | <a class="el" href="classSig
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<hr/>The documentation for this class was generated from the following files:<ul> <hr/>The documentation for this class was generated from the following files:<ul>
<li>/home/romain/work/code/RADSex/src/<a class="el" href="map_8h_source.html">map.h</a></li> <li>/home/romain/work/code/radsex/src/<a class="el" href="map_8h_source.html">map.h</a></li>
<li>/home/romain/work/code/RADSex/src/<a class="el" href="map_8cpp_source.html">map.cpp</a></li> <li>/home/romain/work/code/radsex/src/<a class="el" href="map_8cpp_source.html">map.cpp</a></li>
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<hr/>The documentation for this class was generated from the following files:<ul> <hr/>The documentation for this class was generated from the following files:<ul>
<li>/home/romain/work/code/RADSex/src/<a class="el" href="marker_8h_source.html">marker.h</a></li> <li>/home/romain/work/code/radsex/src/<a class="el" href="marker_8h_source.html">marker.h</a></li>
<li>/home/romain/work/code/RADSex/src/<a class="el" href="marker_8cpp_source.html">marker.cpp</a></li> <li>/home/romain/work/code/radsex/src/<a class="el" href="marker_8cpp_source.html">marker.cpp</a></li>
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...@@ -340,8 +340,8 @@ Private Attributes</h2></td></tr> ...@@ -340,8 +340,8 @@ Private Attributes</h2></td></tr>
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<hr/>The documentation for this class was generated from the following files:<ul> <hr/>The documentation for this class was generated from the following files:<ul>
<li>/home/romain/work/code/RADSex/src/<a class="el" href="markers__table_8h_source.html">markers_table.h</a></li> <li>/home/romain/work/code/radsex/src/<a class="el" href="markers__table_8h_source.html">markers_table.h</a></li>
<li>/home/romain/work/code/RADSex/src/<a class="el" href="markers__table_8cpp_source.html">markers_table.cpp</a></li> <li>/home/romain/work/code/radsex/src/<a class="el" href="markers__table_8cpp_source.html">markers_table.cpp</a></li>
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</div><!-- contents --> </div><!-- contents -->
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...@@ -280,8 +280,8 @@ std::unordered_map&lt; std::string, uint &gt;&#160;</td><td class="memItemRight" ...@@ -280,8 +280,8 @@ std::unordered_map&lt; std::string, uint &gt;&#160;</td><td class="memItemRight"
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<hr/>The documentation for this class was generated from the following files:<ul> <hr/>The documentation for this class was generated from the following files:<ul>
<li>/home/romain/work/code/RADSex/src/<a class="el" href="popmap_8h_source.html">popmap.h</a></li> <li>/home/romain/work/code/radsex/src/<a class="el" href="popmap_8h_source.html">popmap.h</a></li>
<li>/home/romain/work/code/RADSex/src/<a class="el" href="popmap_8cpp_source.html">popmap.cpp</a></li> <li>/home/romain/work/code/radsex/src/<a class="el" href="popmap_8cpp_source.html">popmap.cpp</a></li>
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...@@ -341,8 +341,8 @@ Export markers significantly associated with group to a file, either: <br /> ...@@ -341,8 +341,8 @@ Export markers significantly associated with group to a file, either: <br />
</div> </div>
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<hr/>The documentation for this class was generated from the following files:<ul> <hr/>The documentation for this class was generated from the following files:<ul>
<li>/home/romain/work/code/RADSex/src/<a class="el" href="signif_8h_source.html">signif.h</a></li> <li>/home/romain/work/code/radsex/src/<a class="el" href="signif_8h_source.html">signif.h</a></li>
<li>/home/romain/work/code/RADSex/src/<a class="el" href="signif_8cpp_source.html">signif.cpp</a></li> <li>/home/romain/work/code/radsex/src/<a class="el" href="signif_8cpp_source.html">signif.cpp</a></li>
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</div><!-- doc-content --> </div><!-- doc-content -->
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...@@ -345,8 +345,8 @@ Export markers verifying the conditions defined with CLI arguments, either: <br ...@@ -345,8 +345,8 @@ Export markers verifying the conditions defined with CLI arguments, either: <br
</div> </div>
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<hr/>The documentation for this class was generated from the following files:<ul> <hr/>The documentation for this class was generated from the following files:<ul>
<li>/home/romain/work/code/RADSex/src/<a class="el" href="subset_8h_source.html">subset.h</a></li> <li>/home/romain/work/code/radsex/src/<a class="el" href="subset_8h_source.html">subset.h</a></li>
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<title>RADSex: /home/romain/work/code/RADSex/src/depth.cpp File Reference</title> <title>RADSex: /home/romain/work/code/radsex/src/depth.cpp File Reference</title>
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<title>RADSex: /home/romain/work/code/RADSex/src/depth.cpp Source File</title> <title>RADSex: /home/romain/work/code/radsex/src/depth.cpp Source File</title>
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