Cleaned up comment lines in output files for consistency

src/distrib.cpp

@@ -55,6 +55,10 @@ void Distrib::generate_output() {
 
     // Generate the output file
     std::ofstream output_file = open_output(this->parameters.output_file_path);
+    output_file << "#source:distrib;min_depth:" << parameters.min_depth <<
+                   ";signif_threshold:" << parameters.signif_threshold <<
+                   ";bonferroni:" << std::boolalpha << (not parameters.disable_correction) <<
+                   ";n_markers:" << this->results.n_markers << "\n";
     output_file << this->parameters.group1 << "\t" << this->parameters.group2 << "\t" << "Markers" << "\t" <<
                    "P" << "\t" << "CorrectedP" << "\t" << "Signif" << "\t" << "Bias" << "\n";
 

src/freq.cpp

@@ -47,6 +47,7 @@ void Freq::process_marker(Marker& marker) {
 void Freq::generate_output() {
 
     std::ofstream output_file = open_output(parameters.output_file_path);
+    output_file << "#source:radsex-freq;min_depth:" << parameters.min_depth <<  "\n";
     output_file << "Frequency" << "\t" << "Count" << "\n";
 
     for (uint i=1; i <= this->markers_table.header.n_individuals; ++i) output_file << i << "\t" << this->results[i] << "\n";  // Iterate over the map

src/signif.cpp

@@ -49,7 +49,7 @@ void Signif::generate_output() {
 
     if (not this->parameters.output_fasta) {
 
-        output_file << "#source:signif;min_depth:" << parameters.min_depth << ";signif_threshold:" << parameters.signif_threshold <<
+        output_file << "#source:radsex-signif;min_depth:" << parameters.min_depth << ";signif_threshold:" << parameters.signif_threshold <<
                        ";bonferroni:" <<  std::boolalpha << (not parameters.disable_correction) << "\n";
         output_file << print_list(this->markers_table.header.header, "\t") << "\n";
 

src/subset.cpp

@@ -51,10 +51,10 @@ void Subset::generate_output() {
 
     if (not this->parameters.output_fasta) {
 
-        this->output_file << "#source:subset;min_depth:" << parameters.min_depth << ";filters:[" <<
-                             parameters.subset_min_group1 << "," << parameters.subset_max_group1 << "," <<
-                             parameters.subset_min_group2 << "," << parameters.subset_max_group2 << "," <<
-                             parameters.subset_min_individuals << "," << parameters.subset_max_individuals <<
+        this->output_file << "#source:radsex-subset;min_depth:" << parameters.min_depth << ";filters:" <<
+                             parameters.group1 << "=[" << parameters.subset_min_group1 << "," << parameters.subset_max_group1 << "]," <<
+                             parameters.group2 << "=[" << parameters.subset_min_group2 << "," << parameters.subset_max_group2 << "]," <<
+                             "individuals=[" << parameters.subset_min_individuals << "," << parameters.subset_max_individuals <<
                              "];signif_threshold:" << parameters.signif_threshold << ";bonferroni:" <<
                              std::boolalpha << (not parameters.disable_correction) << "\n";