Skip to content
GitLab
Menu
Projects
Groups
Snippets
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
khalid
radsex
Commits
bf1f5d08
Commit
bf1f5d08
authored
Apr 25, 2020
by
RomainFeron
Browse files
Updated comment lines
parent
8aac2719
Changes
3
Hide whitespace changes
Inline
Side-by-side
src/distrib.cpp
View file @
bf1f5d08
...
@@ -55,7 +55,7 @@ void Distrib::generate_output() {
...
@@ -55,7 +55,7 @@ void Distrib::generate_output() {
// Generate the output file
// Generate the output file
std
::
ofstream
output_file
=
open_output
(
this
->
parameters
.
output_file_path
);
std
::
ofstream
output_file
=
open_output
(
this
->
parameters
.
output_file_path
);
output_file
<<
"#source:distrib;min_depth:"
<<
parameters
.
min_depth
<<
output_file
<<
"#source:
radsex-
distrib;min_depth:"
<<
parameters
.
min_depth
<<
";signif_threshold:"
<<
parameters
.
signif_threshold
<<
";signif_threshold:"
<<
parameters
.
signif_threshold
<<
";bonferroni:"
<<
std
::
boolalpha
<<
(
not
parameters
.
disable_correction
)
<<
";bonferroni:"
<<
std
::
boolalpha
<<
(
not
parameters
.
disable_correction
)
<<
";n_markers:"
<<
this
->
results
.
n_markers
<<
"
\n
"
;
";n_markers:"
<<
this
->
results
.
n_markers
<<
"
\n
"
;
...
...
src/signif.cpp
View file @
bf1f5d08
...
@@ -50,7 +50,8 @@ void Signif::generate_output() {
...
@@ -50,7 +50,8 @@ void Signif::generate_output() {
if
(
not
this
->
parameters
.
output_fasta
)
{
if
(
not
this
->
parameters
.
output_fasta
)
{
output_file
<<
"#source:radsex-signif;min_depth:"
<<
parameters
.
min_depth
<<
";signif_threshold:"
<<
parameters
.
signif_threshold
<<
output_file
<<
"#source:radsex-signif;min_depth:"
<<
parameters
.
min_depth
<<
";signif_threshold:"
<<
parameters
.
signif_threshold
<<
";bonferroni:"
<<
std
::
boolalpha
<<
(
not
parameters
.
disable_correction
)
<<
"
\n
"
;
";bonferroni:"
<<
std
::
boolalpha
<<
(
not
parameters
.
disable_correction
)
<<
";n_markers:"
<<
this
->
results
.
n_markers
<<
"
\n
"
;
output_file
<<
print_list
(
this
->
markers_table
.
header
.
header
,
"
\t
"
)
<<
"
\n
"
;
output_file
<<
print_list
(
this
->
markers_table
.
header
.
header
,
"
\t
"
)
<<
"
\n
"
;
}
}
...
...
src/subset.cpp
View file @
bf1f5d08
...
@@ -56,7 +56,8 @@ void Subset::generate_output() {
...
@@ -56,7 +56,8 @@ void Subset::generate_output() {
parameters
.
group2
<<
"=["
<<
parameters
.
subset_min_group2
<<
","
<<
parameters
.
subset_max_group2
<<
"],"
<<
parameters
.
group2
<<
"=["
<<
parameters
.
subset_min_group2
<<
","
<<
parameters
.
subset_max_group2
<<
"],"
<<
"individuals=["
<<
parameters
.
subset_min_individuals
<<
","
<<
parameters
.
subset_max_individuals
<<
"individuals=["
<<
parameters
.
subset_min_individuals
<<
","
<<
parameters
.
subset_max_individuals
<<
"];signif_threshold:"
<<
parameters
.
signif_threshold
<<
";bonferroni:"
<<
"];signif_threshold:"
<<
parameters
.
signif_threshold
<<
";bonferroni:"
<<
std
::
boolalpha
<<
(
not
parameters
.
disable_correction
)
<<
"
\n
"
;
std
::
boolalpha
<<
(
not
parameters
.
disable_correction
)
<<
";n_markers:"
<<
this
->
results
.
n_markers
<<
"
\n
"
;
this
->
output_file
<<
print_list
(
this
->
markers_table
.
header
.
header
,
"
\t
"
)
<<
"
\n
"
;
this
->
output_file
<<
print_list
(
this
->
markers_table
.
header
.
header
,
"
\t
"
)
<<
"
\n
"
;
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment