Commits · 7bbb36f46c8d03771e6f2da6fa6289e1d72aab82 · khalid / radsex

08 Oct, 2018 1 commit
- Implemented basic documentation (1oo% of the previous readme) · 7bbb36f4
  Romain Feron authored Oct 08, 2018
  
  7bbb36f4
04 Oct, 2018 1 commit
- Input files doc v1 · 76871066
  Romain Feron authored Oct 04, 2018
  
  76871066
03 Oct, 2018 4 commits
- Finished v1 for detailed usage · cf69e760
  Romain Feron authored Oct 03, 2018
  
  cf69e760
- Polished existing usage · fe7c310b
  Romain Feron authored Oct 03, 2018
  
  fe7c310b
- Polishing getting started · 8d1688c7
  Romain Feron authored Oct 03, 2018
  
  8d1688c7
- Small polishing of index · 5aa5a491
  Romain Feron authored Oct 03, 2018
  
  5aa5a491
02 Oct, 2018 2 commits
- Test remove md · fc5a910b
  RomainFeron authored Oct 02, 2018
  
  fc5a910b
- Basic doc structure, getting started, and beginning of usage · e087075b
  RomainFeron authored Oct 02, 2018
  
  e087075b
15 Sep, 2018 2 commits
- Installation doc page · cbe7e0bc
  RomainFeron authored Sep 15, 2018
  
  cbe7e0bc
- Updated theme to ReadTheDocs default · aaa54065
  RomainFeron authored Sep 15, 2018
  
  aaa54065
13 Sep, 2018 4 commits
- Test with sphinx · cea90a33
  RomainFeron authored Sep 13, 2018
  
  cea90a33
- Added markdown parser and first doc test · 9675dd16
  RomainFeron authored Sep 13, 2018
  
  9675dd16
- Basic doc setup · 49a24607
  RomainFeron authored Sep 13, 2018
  
  49a24607
- Permissions - junk · 7bbbc0e0
  RomainFeron authored Sep 13, 2018
  
  7bbbc0e0
23 Jul, 2018 5 commits
- Removed redundant column from option table · f90e1b0b
  Romain Feron authored Jul 23, 2018
  
  f90e1b0b
- Updated readme with new parameter flags · 245e63aa
  Romain Feron authored Jul 23, 2018
  
  245e63aa
- Updated error message for --output-format · dc11e0de
  Romain Feron authored Jul 23, 2018
  
  dc11e0de
- Cleaner makefile · 9615ef17
  Romain Feron authored Jul 23, 2018
  
  9615ef17
- Implemented fasta output for signif and subset · e3b49cdf
  Romain Feron authored Jul 23, 2018
  
  e3b49cdf
10 Jul, 2018 1 commit
- Handle spaces in string type parameter values · 995c5bfc
  Romain Feron authored Jul 10, 2018
  
  995c5bfc
13 Jun, 2018 1 commit
- Make clean for libraries and fixed bug in file extension detection · 9fe76b5b
  Romain Feron authored Jun 13, 2018
  
  9fe76b5b
20 Apr, 2018 1 commit
- Added messages for steps · a2bf9992
  Romain Feron authored Apr 20, 2018
  
  a2bf9992
18 Apr, 2018 1 commit
- Implemented computing scaffold lengths before mapping · 3be93c58
  Romain Feron authored Apr 18, 2018
  
  3be93c58
17 Apr, 2018 3 commits
- Updated doc · 40746221
  Romain Feron authored Apr 17, 2018
  
  40746221
- Faster BWA make · ab8acb14
  Romain Feron authored Apr 17, 2018
  
  ab8acb14
- Updated sex distribution and mapping output to add signif field · f5609b8e
  Romain Feron authored Apr 17, 2018
```
Moved mapping output to output module for clarity. Still need some doc
```
  f5609b8e
16 Apr, 2018 3 commits
- Updated sex distribution output · ba4c2f01
  Romain Feron authored Apr 16, 2018
  
  ba4c2f01
- Updated doc with full usage and a quick start guide · 2783c62a
  Romain Feron authored Apr 16, 2018
  
  2783c62a
- Updated command line interface to match doc · 7fa84ee6
  Romain Feron authored Apr 16, 2018
  
  7fa84ee6
13 Apr, 2018 4 commits
- Started updating readme · b8effb59
  Romain Feron authored Apr 13, 2018
  
  b8effb59
- Removed files which are now relevant to radsex-vis · ce9cfadf
  Romain Feron authored Apr 13, 2018
  
  ce9cfadf
- Tentative process_radtags fix for file names with . in them · 6eb8588e
  Romain Feron authored Apr 13, 2018
  
  6eb8588e
- Fixed bug with p-value lower than precision of a double · cbd417de
  Romain Feron authored Apr 13, 2018
```
Added a minimum value of 10^-16 for p-values
```
  cbd417de
10 Apr, 2018 1 commit
- Minor fixes to mapping and stats · 9ee178c8
  Romain Feron authored Apr 10, 2018
  
  9ee178c8
06 Apr, 2018 2 commits
- Implemented mapping function · 555d0a7f
  Romain Feron authored Apr 06, 2018
  
  555d0a7f
- Setup for mapping function using BWA · 0267d6aa
  Romain Feron authored Apr 06, 2018
  
  0267d6aa
05 Apr, 2018 1 commit
- Created files for mapping module · d519ddde
  Romain Feron authored Apr 05, 2018
  
  d519ddde
03 Apr, 2018 3 commits
- Finished implementing new output + added parameter to output in old format · 75df6777
  Romain Feron authored Apr 03, 2018
  
  75df6777
- Formatting · d19ba5b9
  Romain Feron authored Apr 03, 2018
  
  d19ba5b9
- small bug fixes for new sex distribution output · c889dcb2
  Romain Feron authored Apr 03, 2018
  
  c889dcb2