Dev

Working rescue module from dev

Implemented Rescue module: for a set of extracted haplotypes, find similar sequences in the catalog and group them in stacks (loci). Export coverage per individual for each sequence of each stack

Removed old analyses files (moved to modules) and created shared module containing shared resources (parameters, locus class, commons)

File handling improvements: better popmap loading, haplotypes as count of males/females, renaming functions