Commits · d519ddde6f351109b12acfe3849ea3387e665826 · khalid / radsex

05 Apr, 2018 1 commit
- Created files for mapping module · d519ddde
  Romain Feron authored Apr 05, 2018
  
  d519ddde
03 Apr, 2018 11 commits
- Finished implementing new output + added parameter to output in old format · 75df6777
  Romain Feron authored Apr 03, 2018
  
  75df6777
- Formatting · d19ba5b9
  Romain Feron authored Apr 03, 2018
  
  d19ba5b9
- small bug fixes for new sex distribution output · c889dcb2
  Romain Feron authored Apr 03, 2018
  
  c889dcb2
- Implemented new output for sex distribution table · 0c43f907
  Romain Feron authored Apr 03, 2018
  
  0c43f907
- Added typedef for sex distribution results · b3c016e8
  Romain Feron authored Apr 03, 2018
  
  b3c016e8
- Refactored chi squared calculation into a separate file · 949a1144
  Romain Feron authored Apr 03, 2018
  
  949a1144
- cleanup · 4cbeeac0
  Romain Feron authored Apr 03, 2018
  
  4cbeeac0
- Changed license from MIT to GPL3 · 75aa01f6
  Romain Feron authored Apr 03, 2018
  
  75aa01f6
- Removed qtCreator files from master · b2e34ce8
  Romain Feron authored Apr 03, 2018
  
  b2e34ce8
- qtCreator file · a72f0da1
  Romain Feron authored Apr 03, 2018
  
  a72f0da1
- Minor help text change · 9ff064bf
  Romain Feron authored Apr 03, 2018
  
  9ff064bf
07 Mar, 2018 2 commits
- removed debug output · 588fdb8d
  Romain Feron authored Mar 07, 2018
  
  588fdb8d
- Implemented extraction of sequences significantly associated with sex - debugging on genotoul · 78ed159e
  Romain Feron authored Mar 07, 2018
  
  78ed159e
05 Mar, 2018 1 commit
- Added min_individuals and max_individuals parameters to subset · f4b39ca8
  Romain Feron authored Mar 05, 2018
  
  f4b39ca8
14 Feb, 2018 1 commit
- Setup for filtering function · 96d147c7
  Romain Feron authored Feb 14, 2018
  
  96d147c7
13 Feb, 2018 3 commits
- Added header to group loci output · efbbd962
  Romain Feron authored Feb 13, 2018
  
  efbbd962
- Sex distribution matrix now has 0 at position 0, 0 · e14f2962
  Romain Feron authored Feb 13, 2018
```
Sequences not found in any individual are an artefact of coverage filtering and are not relevant for other analyses
```
  e14f2962
- Removed old code · 6acc386c
  Romain Feron authored Feb 13, 2018
  
  6acc386c
12 Feb, 2018 3 commits
- Fixed min cov output bug · 8fb06b89
  Romain Feron authored Feb 12, 2018
  
  8fb06b89
- Added min coverage to process reads and implemented C-style file write... · 2c9e8b36
  Romain Feron authored Feb 12, 2018
```
Added min coverage to process reads and implemented C-style file write (optimization still necessary)
```
  2c9e8b36
- qtcreator files · cd003639
  Romain Feron authored Feb 12, 2018
  
  cd003639
09 Feb, 2018 1 commit
- Small bugfix in subset max females parameter · 35fc2c60
  Romain Feron authored Feb 09, 2018
  
  35fc2c60
08 Feb, 2018 5 commits
- Fixed output bug for sex distribution · 499b2cfe
  Romain Feron authored Feb 08, 2018
  
  499b2cfe
- Fixed number of males / females bug · b19f1496
  Romain Feron authored Feb 08, 2018
  
  b19f1496
- Fixed overflow in species with a lot of sequences · 4a70d348
  Romain Feron authored Feb 08, 2018
  
  4a70d348
- Merge branch 'dev' · ac00300c
  Romain Feron authored Feb 08, 2018
  
  ac00300c
- Added todo list · b32de72a
  Romain Feron authored Feb 08, 2018
  
  b32de72a
07 Feb, 2018 5 commits
- Implemented locus grouping analysis · 7729fcb7
  Romain Feron authored Feb 07, 2018
  
  7729fcb7
- Added edlib license · 0c13bdac
  Romain Feron authored Feb 07, 2018
  
  0c13bdac
- Modified include structure for external libs · 0275edaf
  Romain Feron authored Feb 07, 2018
  
  0275edaf
- Base structure to implement demultiplexing. Actual implementation may come later · 62d23181
  Romain Feron authored Feb 07, 2018
  
  62d23181
- Reverse complement function · e98ee5d4
  Romain Feron authored Feb 07, 2018
  
  e98ee5d4
06 Feb, 2018 7 commits
- Added parameter value verification in parsing · dd2f0a0f
  Romain Feron authored Feb 06, 2018
  
  dd2f0a0f
- Small fix for parameter descriptions, added output directory parameter · a144ae90
  Romain Feron authored Feb 06, 2018
  
  a144ae90
- Implemented reading barcodes file · f2e41dc5
  Romain Feron authored Feb 06, 2018
  
  f2e41dc5
- Removed bin from tracked folders · 626cf2a4
  Romain Feron authored Feb 06, 2018
  
  626cf2a4
- Implemented frequencies analysis · 6ef18e03
  Romain Feron authored Feb 06, 2018
  
  6ef18e03
- Fix function doc · eb9d658a
  Romain Feron authored Feb 06, 2018
  
  eb9d658a
- Cleanup gitignore · 932bf4a0
  Romain Feron authored Feb 06, 2018
  
  932bf4a0