- 06 Feb, 2018 3 commits
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Romain Feron authored
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Romain Feron authored
This pipeline doesn't use Stacks anymore, a replacement for stacks was implemented (still need to implemented process_radtags) The python pipeline to be used with Stacks was moved to a legacy branch
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Romain Feron authored
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- 08 Dec, 2017 1 commit
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Romain Feron authored
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- 06 Dec, 2017 1 commit
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Romain Feron authored
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- 05 Dec, 2017 1 commit
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Romain Feron authored
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- 14 Nov, 2017 9 commits
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Romain Feron authored
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Romain Feron authored
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Romain Feron authored
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Romain Feron authored
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Romain Feron authored
For now, only implemented in loci_matrix, will be added to other components in the future. Eventually, there won't be a need for haplotypes file anymore
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Romain Feron authored
Moved file detection to parameters object. Streamlined function parameters, most things are stored in global parameters object Tested quickly on frequencies, haplotypes, and heatmap
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Romain Feron authored
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Romain Feron authored
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Romain Feron authored
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- 09 Nov, 2017 2 commits
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Romain Feron authored
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Romain Feron authored
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- 26 Oct, 2017 1 commit
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Romain Feron authored
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- 22 Sep, 2017 2 commits
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Romain Feron authored
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Romain Feron authored
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- 21 Sep, 2017 1 commit
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Romain Feron authored
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- 20 Sep, 2017 1 commit
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Romain Feron authored
Statistics are now done in R when plotting the heatmap. Test will be added again in this pipeline in a module to generate fasta file for significant sequences
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- 19 Sep, 2017 1 commit
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Romain Feron authored
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- 18 Sep, 2017 1 commit
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Romain Feron authored
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- 13 Sep, 2017 1 commit
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Romain Feron authored
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- 11 Sep, 2017 2 commits
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Romain Feron authored
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Romain Feron authored
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- 31 Aug, 2017 3 commits
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Romain Feron authored
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Romain Feron authored
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Romain Feron authored
First version of README Added MIT License Added install_packages.R script which installs packages required for visualization Added examples directory with example plots
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- 30 Aug, 2017 8 commits
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Romain Feron authored
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Romain Feron authored
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Romain Feron authored
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Romain Feron authored
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Romain Feron authored
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Romain Feron authored
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Romain Feron authored
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Romain Feron authored
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- 29 Aug, 2017 1 commit
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Romain Feron authored
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- 11 Aug, 2017 1 commit
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Romain Feron authored
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