Commits · master · khalid / radsex

27 Sep, 2021 1 commit
- Now we retain the right length of tagged seq · fe8eb17a
  khalid authored Sep 27, 2021
  
  fe8eb17a
17 Aug, 2021 2 commits
- Mutex just before changing results map · 0e13d458
  khalid authored Aug 17, 2021
  
  0e13d458
- Now processTagged return CPM normalized read counts · 4a3ab705
  khalid authored Aug 17, 2021
  
  4a3ab705
13 Aug, 2021 1 commit
- Change log text · 2f069bb0
  khalid authored Aug 13, 2021
  
  2f069bb0
11 Aug, 2021 2 commits
- Add info for processTagged option · e2ded7b2
  khalid authored Aug 11, 2021
  
  e2ded7b2
- Add processTagged option to create locus from indexed reads with variable tags size · 662695ae
  khalid authored Aug 11, 2021
  
  662695ae
10 May, 2021 1 commit
- Updated readme for release 1.2.0 · 841442d1
  RomainFeron authored May 10, 2021
  
  841442d1
21 Apr, 2021 1 commit

Fixed segfault when no markers are retained in depth computations · 425430dc

RomainFeron authored Apr 21, 2021

- Added a parameter to the depth command to specify the minimum frequency
- Added a check for number of retained markers with an error message + exit when no markers are retained

425430dc

30 Mar, 2021 2 commits
- Merge branch 'master' of github.com:RomainFeron/RADSex · bad6866a
  RomainFeron authored Mar 30, 2021
  
  bad6866a
- Minor readme update · 310f5b48
  RomainFeron authored Mar 30, 2021
  
  310f5b48
22 Mar, 2021 1 commit
- Merge pull request #22 from SexGenomicsToolkit/osx_fix · af43dd75
  Romain Feron authored Mar 22, 2021
```
Osx fix
```
  af43dd75
19 Mar, 2021 2 commits
- Tentative fix for osx uint error · b6dc2d5a
  RomainFeron authored Mar 19, 2021
  
  b6dc2d5a
- Updated bwa to include fix for gcc10 build · 08770968
  RomainFeron authored Mar 19, 2021
  
  08770968
21 Aug, 2020 4 commits
- Fixed citation style · ea2b7f26
  RomainFeron authored Aug 21, 2020
  
  ea2b7f26
- Changed citation style to Chicago · 7438ef28
  RomainFeron authored Aug 21, 2020
  
  7438ef28
- Merge branch 'dev' into master · ca07ef9a
  RomainFeron authored Aug 21, 2020
  
  ca07ef9a
- Added citation guidelines to readme · 6236bded
  RomainFeron authored Aug 21, 2020
  
  6236bded
29 Apr, 2020 2 commits
- Fixed bug in 'map' for low number of samples · cc517039
  RomainFeron authored Apr 29, 2020
  
  cc517039
- Updated compiler requirements in makefile + fixed minor bug in makefile · eeb59f14
  RomainFeron authored Apr 29, 2020
  
  eeb59f14
27 Apr, 2020 1 commit
- Fixed bug in freq output for some datasets · 14c1f783
  RomainFeron authored Apr 27, 2020
  
  14c1f783
25 Apr, 2020 3 commits
- Updated comment lines · bf1f5d08
  RomainFeron authored Apr 25, 2020
  
  bf1f5d08
- Cleaned up comment lines in output files for consistency · 8aac2719
  RomainFeron authored Apr 25, 2020
  
  8aac2719
- Added comment line to map output file · 3b1d81ea
  RomainFeron authored Apr 25, 2020
  
  3b1d81ea
24 Apr, 2020 1 commit
- Fixed problem with comment and header lines in subset tabulated output · 86ccfbd8
  RomainFeron authored Apr 24, 2020
  
  86ccfbd8
22 Apr, 2020 5 commits
- Added link to internal documentation in readme · dd3e92ea
  RomainFeron authored Apr 22, 2020
  
  dd3e92ea
- Updated docs and added a redirection index for github pages · 87cd8a3b
  RomainFeron authored Apr 22, 2020
  
  87cd8a3b
- minor makefile typo · 7fa05cc1
  RomainFeron authored Apr 22, 2020
  
  7fa05cc1
- Updated gitignore · 3e85c5b0
  RomainFeron authored Apr 22, 2020
  
  3e85c5b0
- Removed qtcreator project file from repo · ced45a10
  RomainFeron authored Apr 22, 2020
  
  ced45a10
20 Apr, 2020 8 commits
- Changed ulong to unsigned long to compile on clang <6 (bioconda osx build) · f73f4d4b
  RomainFeron authored Apr 20, 2020
  
  f73f4d4b
- Fixed = to += for environment variables in makefile · 605eeff5
  RomainFeron authored Apr 20, 2020
  
  605eeff5
- Cleaner makefile build bwa with gcc and radsex with g++ · 69892dee
  RomainFeron authored Apr 20, 2020
  
  69892dee
- Quick readme update · 1bd98186
  RomainFeron authored Apr 20, 2020
  
  1bd98186
- Merge branch 'dev' · d2c659db
  RomainFeron authored Apr 20, 2020
  
  d2c659db
- Cleaned up docs, removed sphinx doc that has been moved to sexgenomicstoolkit.github.io · 37accc95
  RomainFeron authored Apr 20, 2020
  
  37accc95
- Merged branch dev for 1.0.0 · 8968b5fb
  RomainFeron authored Apr 20, 2020
  
  8968b5fb
- Changed 'Pcorr' to 'CorrectedP' in map output for consistency · e5cade64
  RomainFeron authored Apr 20, 2020
  
  e5cade64
14 Apr, 2020 1 commit
- Changed Individual to Sample in depth output · bf04af63
  RomainFeron authored Apr 14, 2020
  
  bf04af63
13 Apr, 2020 2 commits
- Added corrected p-values output to subset · 3a7340ca
  RomainFeron authored Apr 13, 2020
  
  3a7340ca
- Updated doc · f74a72d0
  RomainFeron authored Apr 13, 2020
  
  f74a72d0