Initial commit with cluster ISE-M modulefiles

R-3.0.3

+#%Module######################################################################
+#
+# R-3.0.3 modulefile
+#
+
+proc ModulesHelp { } {
+puts stderr "This modulefile defines the library paths and"
+puts stderr "include paths needed to use R-3.0.3"
+puts stderr "The program R-3.0.3"
+puts stderr "is added to PATH."
+}
+
+
+set is_module_rm [module-info mode remove]
+
+set R_LEVEL 3.0.3
+set R_CURPATH /share/apps/bin/R/R-$R_LEVEL
+
+prepend-path PATH       $R_CURPATH/bin/
+prepend-path LD_LIBRARY_PATH  $R_CURPATH/lib64/R/lib
+prepend-path MANPATH      $R_CURPATH/share/man
+
+append-path  PE_PRODUCT_LIST  R-$R_LEVEL
+setenv  R_LIBS    $R_CURPATH/lib64/R/library

R-3.1.3

+#%Module######################################################################
+#
+# R-3.1.3 modulefile
+#
+
+proc ModulesHelp { } {
+puts stderr "This modulefile defines the library paths and"
+puts stderr "include paths needed to use R-3.1.3"
+puts stderr "The program R-3.1.3"
+puts stderr "is added to PATH."
+}
+
+
+set is_module_rm [module-info mode remove]
+
+set R_LEVEL 3.1.3
+set R_CURPATH /share/apps/bin/R/R-$R_LEVEL
+
+prepend-path PATH       $R_CURPATH/bin/
+prepend-path LD_LIBRARY_PATH  $R_CURPATH/lib64/R/lib
+prepend-path MANPATH      $R_CURPATH/share/man
+
+append-path  PE_PRODUCT_LIST  R-$R_LEVEL
+setenv  R_LIBS    $R_CURPATH/lib64/R/library

R-3.2.0

+#%Module######################################################################
+#
+# R-3.2.0 modulefile
+#
+
+proc ModulesHelp { } {
+puts stderr "This modulefile defines the library paths and"
+puts stderr "include paths needed to use R-3.2.0"
+puts stderr "The program R-3.2.0"
+puts stderr "is added to PATH."
+}
+
+
+set is_module_rm [module-info mode remove]
+
+set R_LEVEL 3.2.0
+set R_CURPATH /share/apps/bin/R/R-$R_LEVEL
+
+prepend-path PATH       $R_CURPATH/bin/
+prepend-path LD_LIBRARY_PATH  $R_CURPATH/lib64/R/lib
+prepend-path MANPATH      $R_CURPATH/share/man
+
+append-path  PE_PRODUCT_LIST  R-$R_LEVEL
+setenv  R_LIBS    $R_CURPATH/lib64/R/library

README.md

+# Modulefiles
+
+
+Ce dossier contient un ensemble de modulefiles à utiliser pour le cluster ISE-M et MBB

gcc4.9

+#%Module######################################################################
+#
+# gcc4.9 modulefile 20150522
+#
+
+proc ModulesHelp { } {
+puts stderr "This modulefile defines the library paths and"
+puts stderr "include paths needed to use gcc4.9"
+puts stderr "The program gcc4.9"
+puts stderr "is added to PATH."
+}
+
+
+set is_module_rm [module-info mode remove]
+
+set GCC_LEVEL 4.9
+set GCC_SUBVER 2
+set GCC_CURPATH /share/apps/bin/gcc
+
+prepend-path PATH       $GCC_CURPATH/gcc-$GCC_LEVEL.$GCC_SUBVER-bin/bin
+prepend-path LD_LIBRARY_PATH  $GCC_CURPATH/gcc-$GCC_LEVEL.$GCC_SUBVER-bin/lib64/:/usr/local/lib:/share/apps/lib/libmpc
+prepend-path MANPATH      $GCC_CURPATH/gcc-$GCC_LEVEL.$GCC_SUBVER-bin/share/man
+
+append-path  PE_PRODUCT_LIST  GCC

java1.8

+#%Module######################################################################
+#
+# java1.8 modulefile
+#
+
+proc ModulesHelp { } {
+puts stderr "This modulefile defines the library paths and"
+puts stderr "include paths needed to use java1.8."
+puts stderr "You could use BEAST2.2.1 with that version."
+puts stderr "The program java1.8"
+puts stderr "is added to PATH."
+}
+
+
+set is_module_rm [module-info mode remove]
+
+set JAVA_LEVEL 1.8
+#set JAVA_CURPATH /usr/lib/jvm/jre-1.8.0-openjdk-1.8.0.20-3.b26.el6.x86_64/
+set JAVA_CURPATH /etc/alternatives/jre_1.8.0_openjdk
+setenv JAVA_HOME $JAVA_CURPATH
+
+prepend-path PATH       $JAVA_CURPATH/bin/
+prepend-path LD_LIBRARY_PATH  $JAVA_CURPATH/lib/
+
+append-path  PE_PRODUCT_LIST  JAVA

openmpi-x86_64

+#%Module 1.0
+#
+#  OpenMPI module for use with 'environment-modules' package:
+#
+conflict		mpi
+prepend-path 		PATH 		/usr/lib64/openmpi/bin
+prepend-path 		LD_LIBRARY_PATH /usr/lib64/openmpi/lib
+prepend-path		PYTHONPATH	/usr/lib64/python2.6/site-packages/openmpi
+prepend-path		MANPATH		/usr/share/man/openmpi-x86_64
+setenv 			MPI_BIN		/usr/lib64/openmpi/bin
+setenv			MPI_SYSCONFIG	/etc/openmpi-x86_64
+setenv			MPI_FORTRAN_MOD_DIR	/usr/lib64/gfortran/modules/openmpi-x86_64
+setenv			MPI_INCLUDE	/usr/include/openmpi-x86_64
+setenv	 		MPI_LIB		/usr/lib64/openmpi/lib
+setenv			MPI_MAN		/usr/share/man/openmpi-x86_64
+setenv			MPI_PYTHON_SITEARCH	/usr/lib64/python2.6/site-packages/openmpi
+setenv			MPI_COMPILER	openmpi-x86_64
+setenv			MPI_SUFFIX	_openmpi
+setenv	 		MPI_HOME	/usr/lib64/openmpi

perl5.14

+#%Module######################################################################
+#
+# perl5.14.2 modulefile
+#
+
+proc ModulesHelp { } {
+puts stderr "This modulefile defines the library paths and"
+puts stderr "include paths needed to use perl5.14"
+puts stderr "You could use bioperl with that version."
+puts stderr "The program perl5.14"
+puts stderr "is added to PATH."
+}
+
+
+set is_module_rm [module-info mode remove]
+
+set PERL_LEVEL 5.14.2
+set PERL_CURPATH /opt/perl
+
+prepend-path PATH       $PERL_CURPATH/bin/
+prepend-path LD_LIBRARY_PATH  $PERL_CURPATH/lib/$PERL_LEVEL
+prepend-path LD_LIBRARY_PATH  $PERL_CURPATH/lib/site_perl/$PERL_LEVEL
+prepend-path MANPATH      $PERL_CURPATH/share/man
+
+append-path  PE_PRODUCT_LIST  PERL
+setenv  PERLLIB    $PERL_CURPATH/lib/site_perl/5.14.2/

python2.7

+#%Module######################################################################
+#
+# python2.7 modulefile 20160115
+#
+
+proc ModulesHelp { } {
+puts stderr "This modulefile defines the library paths and"
+puts stderr "include paths needed to use python2.7."
+puts stderr "You could use biopython with that version."
+puts stderr "The program python2.7"
+puts stderr "is added to PATH."
+}
+
+
+set is_module_rm [module-info mode remove]
+
+set PYTHON_LEVEL 2.7
+set PYTHON_CURPATH /opt/python
+set PYTHON_SHARE_LIBS /share/apps/lib/python
+setenv PYTHONPATH  $PYTHON_CURPATH/lib:$PYTHON_SHARE_LIBS/lib/python$PYTHON_LEVEL/site-packages:$PYTHON_CURPATH/lib/python$PYTHON_LEVEL/site-packages
+
+unset-alias python
+set-alias python python2.7
+
+prepend-path PATH       $PYTHON_CURPATH/bin/:$PYTHON_SHARE_LIBS/bin
+prepend-path LD_LIBRARY_PATH  $PYTHON_CURPATH/lib/python$PYTHON_LEVEL
+prepend-path MANPATH      $PYTHON_CURPATH/share/man
+
+append-path  PE_PRODUCT_LIST  PYTHON2.7

python3.3

+#%Module######################################################################
+#
+# python3.3 modulefile 20160115
+#
+
+proc ModulesHelp { } {
+puts stderr "This modulefile defines the library paths and"
+puts stderr "include paths needed to use python3.3."
+puts stderr "The program python3.3"
+puts stderr "is added to PATH."
+}
+
+
+set is_module_rm [module-info mode remove]
+
+set PYTHON_LEVEL 3.3
+set PYTHON_CURPATH /opt/python
+set PYTHON_SHARE_LIBS /share/apps/lib/python
+setenv PYTHONPATH  $PYTHON_SHARE_LIBS/lib/python$PYTHON_LEVEL/site-packages:/opt/python/lib/python$PYTHON_LEVEL/site-packages
+
+prepend-path PATH       $PYTHON_CURPATH/bin/:$PYTHON_SHARE_LIBS/bin
+prepend-path LD_LIBRARY_PATH  $PYTHON_CURPATH/lib/python$PYTHON_LEVEL
+prepend-path MANPATH      $PYTHON_CURPATH/share/man
+
+append-path  PE_PRODUCT_LIST  PYTHON3.3
+unset-alias python
+set-alias python python3.3
+set-alias python3 python3.3