Commit 8e8cdd37 authored by remy's avatar remy
Browse files

missing directories

parent 2ccdb544
#%Module######################################################################
#
# R-3.0.3 modulefile
#
proc ModulesHelp { } {
puts stderr "This modulefile defines the library paths and"
puts stderr "include paths needed to use R-3.0.3"
puts stderr "The program R-3.0.3"
puts stderr "is added to PATH."
}
set is_module_rm [module-info mode remove]
set R_LEVEL 3.0.3
set R_CURPATH /share/apps/bin/R/R-$R_LEVEL
prepend-path PATH $R_CURPATH/bin/
prepend-path LD_LIBRARY_PATH $R_CURPATH/lib64/R/lib
prepend-path MANPATH $R_CURPATH/share/man
append-path PE_PRODUCT_LIST R-$R_LEVEL
setenv R_LIBS $R_CURPATH/lib64/R/library
#%Module######################################################################
#
# R-3.1.3 modulefile
#
proc ModulesHelp { } {
puts stderr "This modulefile defines the library paths and"
puts stderr "include paths needed to use R-3.1.3"
puts stderr "The program R-3.1.3"
puts stderr "is added to PATH."
}
set is_module_rm [module-info mode remove]
set R_LEVEL 3.1.3
set R_CURPATH /share/apps/bin/R/R-$R_LEVEL
prepend-path PATH $R_CURPATH/bin/
prepend-path LD_LIBRARY_PATH $R_CURPATH/lib64/R/lib
prepend-path MANPATH $R_CURPATH/share/man
append-path PE_PRODUCT_LIST R-$R_LEVEL
setenv R_LIBS $R_CURPATH/lib64/R/library
#%Module######################################################################
#
# R-3.2.0 modulefile
#
proc ModulesHelp { } {
puts stderr "This modulefile defines the library paths and"
puts stderr "include paths needed to use R-3.2.0"
puts stderr "The program R-3.2.0"
puts stderr "is added to PATH."
}
set is_module_rm [module-info mode remove]
set R_LEVEL 3.2.0
set R_CURPATH /share/apps/bin/R/R-$R_LEVEL
prepend-path PATH $R_CURPATH/bin/
prepend-path LD_LIBRARY_PATH $R_CURPATH/lib64/R/lib
prepend-path MANPATH $R_CURPATH/share/man
append-path PE_PRODUCT_LIST R-$R_LEVEL
setenv R_LIBS $R_CURPATH/lib64/R/library
#%Module######################################################################
#
# R-3.3.1 modulefile
#
proc ModulesHelp { } {
puts stderr "This modulefile defines the library paths and"
puts stderr "include paths needed to use R-3.3.1"
puts stderr "The program R-3.3.1"
puts stderr "is added to PATH."
}
set rel [uname release]
global prodlist
set prodlist {xz-5.2.2 openssl/1.1.0b \
atlas curl-7.50.3 \
pcre-8.39 }
set is_module_rm [module-info mode remove]
catch {set modulehomes $env(MODULEPATH)}
if { [ module-info mode load ] } {
foreach prod $prodlist {
foreach mfilehome [ split $modulehomes :] {
if { [file exists $mfilehome/$prod] } {
module load $prod
}
}
}
}
if { [ module-info mode remove ] } {
foreach prod $prodlist {
foreach mfilehome [ split $modulehomes :] {
if { [file exists $mfilehome/$prod] } {
module unload $prod
}
}
}
}
set R_LEVEL 3.3.1
set R_CURPATH /share/apps/bin/R/R-$R_LEVEL
prepend-path PATH $R_CURPATH/bin/
if { $rel == "2.6.32-504.16.2.el6.x86_64" } {
prepend-path LD_LIBRARY_PATH $R_CURPATH/lib64/R/lib
} else {
prepend-path LD_LIBRARY_PATH /share/apps/lib/atlas/3.0:$R_CURPATH/lib64/R/lib
}
prepend-path MANPATH $R_CURPATH/share/man
append-path PE_PRODUCT_LIST R-$R_LEVEL
setenv R_LIBS $R_CURPATH/lib64/R/library
#%Module######################################################################
#
# R-3.4.3 modulefile
#
proc ModulesHelp { } {
puts stderr "This modulefile defines the library paths and"
puts stderr "include paths needed to use R-3.4.3"
puts stderr "The program $R-3.4.3"
puts stderr "is added to PATH."
}
set rel [uname release]
global prodlist
set prodlist { singularity/2.4.1 }
set is_module_rm [module-info mode remove]
catch {set modulehomes $env(MODULEPATH)}
if { [ module-info mode load ] } {
foreach prod $prodlist {
foreach mfilehome [ split $modulehomes :] {
if { [file exists $mfilehome/$prod] } {
module load $prod
}
}
}
}
if { [ module-info mode remove ] } {
foreach prod $prodlist {
foreach mfilehome [ split $modulehomes :] {
if { [file exists $mfilehome/$prod] } {
module unload $prod
unset-alias R
unset-alias Rscript
}
}
}
}
set R_LEVEL 3.4.3
set-alias R "singularity run /share/apps/sing-images/2.4/R-3.4.3_from_source"
set-alias Rscript "singularity exec /share/apps/sing-images/2.4/R-3.4.3_from_source Rscript"
# aliases not passing through SGE. Would need to source a file...
prepend-path PATH /share/apps/sing-images/2.4
append-path PE_PRODUCT_LIST R-$R_LEVEL
#%Module######################################################################
#
# R-3.4.3 modulefile with rjags
#
proc ModulesHelp { } {
puts stderr "This modulefile defines the library paths and"
puts stderr "include paths needed to use R-3.4.3"
puts stderr "The program $R-3.4.3"
puts stderr "is added to PATH."
}
set rel [uname release]
global prodlist
set prodlist { singularity/2.4.1 }
set is_module_rm [module-info mode remove]
catch {set modulehomes $env(MODULEPATH)}
if { [ module-info mode load ] } {
foreach prod $prodlist {
foreach mfilehome [ split $modulehomes :] {
if { [file exists $mfilehome/$prod] } {
module load $prod
}
}
}
}
if { [ module-info mode remove ] } {
foreach prod $prodlist {
foreach mfilehome [ split $modulehomes :] {
if { [file exists $mfilehome/$prod] } {
module unload $prod
unset-alias R
unset-alias Rscript
}
}
}
}
set R_LEVEL 3.4.3
set-alias R "singularity run /share/apps/sing-images/2.4/R-343-jags"
set-alias Rscript "singularity exec /share/apps/sing-images/2.4/R-343-jags"
# aliases not passing through SGE. Would need to source a file...
prepend-path PATH /share/apps/sing-images/2.4
append-path PE_PRODUCT_LIST R-$R_LEVEL
#%Module######################################################################
#
# R-3.5.3 modulefile
#
proc ModulesHelp { } {
puts stderr "This modulefile defines the library paths and"
puts stderr "include paths needed to use R-3.5.3"
puts stderr "The program R-3.5.3"
puts stderr "is added to PATH."
}
set rel [uname release]
global prodlist
set prodlist { singularity/3.1 }
set is_module_rm [module-info mode remove]
catch {set modulehomes $env(MODULEPATH)}
if { [ module-info mode load ] } {
foreach prod $prodlist {
foreach mfilehome [ split $modulehomes :] {
if { [file exists $mfilehome/$prod] } {
module load $prod
}
}
}
}
if { [ module-info mode remove ] } {
foreach prod $prodlist {
foreach mfilehome [ split $modulehomes :] {
if { [file exists $mfilehome/$prod] } {
module unload $prod
unset-alias R
unset-alias Rscript
}
}
}
}
set R_LEVEL 3.5.3
# aliases not passing through SGE. Would need to source a file...
prepend-path PATH /share/apps/sing-images/3.1
append-path PE_PRODUCT_LIST R-$R_LEVEL
#%Module######################################################################
#
# Blast 2.6.0 modulefile
#
proc ModulesHelp { } {
puts stderr "This modulefile defines the library paths and"
puts stderr "include paths needed to use Blast-2.6.0"
puts stderr "The program Blast2.6.0"
puts stderr "is added to PATH."
}
#set rel [uname release]
global prodlist
#set prodlist {gcc/4.9 openssl/1.1.0b \
# atlas openmpi-4.0.1 }
set is_module_rm [module-info mode remove]
#catch {set modulehomes $env(MODULEPATH)}
#if { [ module-info mode load ] } {
# foreach prod $prodlist {
# foreach mfilehome [ split $modulehomes :] {
# if { [file exists $mfilehome/$prod] } {
# module load $prod
# }
# }
# }
#}
#if { [ module-info mode remove ] } {
# foreach prod $prodlist {
# foreach mfilehome [ split $modulehomes :] {
# if { [file exists $mfilehome/$prod] } {
# module unload $prod
# }
# }
# }
#}
set BLAST_LEVEL 2.6.0
set BLAST_CURPATH /share/apps/bin/blast/2/$BLAST_LEVEL
prepend-path PATH $BLAST_CURPATH/bin/
prepend-path LD_LIBRARY_PATH $BLAST_CURPATH/lib
#prepend-path MANPATH $BLAST_CURPATH/share/man
append-path PE_PRODUCT_LIST BLAST.$BLAST_LEVEL
#%Module######################################################################
#
# Blast 2.6.0 modulefile
#
proc ModulesHelp { } {
puts stderr "This modulefile defines the library paths and"
puts stderr "include paths needed to use Blast-2.8.1"
puts stderr "The program Blast2.8.1"
puts stderr "is added to PATH."
}
#set rel [uname release]
global prodlist
#set prodlist {gcc4.9 openssl-1.1.0b \
# atlas openmpi-x86_64 }
set is_module_rm [module-info mode remove]
#catch {set modulehomes $env(MODULEPATH)}
#if { [ module-info mode load ] } {
# foreach prod $prodlist {
# foreach mfilehome [ split $modulehomes :] {
# if { [file exists $mfilehome/$prod] } {
# module load $prod
# }
# }
# }
#}
#if { [ module-info mode remove ] } {
# foreach prod $prodlist {
# foreach mfilehome [ split $modulehomes :] {
# if { [file exists $mfilehome/$prod] } {
# module unload $prod
# }
# }
# }
#}
set BLAST_LEVEL 2.8.1
set BLAST_CURPATH /share/apps/bin/blast/2/$BLAST_LEVEL
prepend-path PATH $BLAST_CURPATH/bin/
prepend-path LD_LIBRARY_PATH $BLAST_CURPATH/lib
#prepend-path MANPATH $BLAST_CURPATH/share/man
append-path PE_PRODUCT_LIST BLAST-$BLAST_LEVEL
#%Module######################################################################
#
# libdapl1.2 modulefile 20181127
#
proc ModulesHelp { } {
puts stderr "This modulefile defines the library paths and"
puts stderr "include paths needed to use the library lib dapl 1.2"
puts stderr "The library dapl1.2 - The DAT API library https://www.openfabrics.org/"
puts stderr "is added to your LD_LIBRARY_PATH."
}
set is_module_rm [module-info mode remove]
set LIBDAPL_LVL 1
set LIBDAPL_SUBVER 2.19
set LIBDAPL_CURPATH /share/apps/lib/dapl/$LIBDAPL_LVL.$LIBDAPL_SUBVER
prepend-path LD_LIBRARY_PATH $LIBDAPL_CURPATH/lib
append-path PE_PRODUCT_LIST LIBDAPL.$LIBDAPL_LVL.$LIBDAPL_SUBVER
#%Module######################################################################
#
# libdapl 2.0.34 modulefile 20181127
#
proc ModulesHelp { } {
puts stderr "This modulefile defines the library paths and"
puts stderr "include paths needed to use the library lib dapl 1.2"
puts stderr "The library dapl1.2 - The DAT API library https://www.openfabrics.org/"
puts stderr "is added to your LD_LIBRARY_PATH."
}
set is_module_rm [module-info mode remove]
set LIBDAPL_LVL 2
set LIBDAPL_SUBVER 0.34
set LIBDAPL_CURPATH /share/apps/lib/dapl/$LIBDAPL_LVL.$LIBDAPL_SUBVER.el6
setenv C_INCLUDE_PATH $LIBDAPL_CURPATH/include
setenv CPLUS_INCLUDE_PATH $LIBDAPL_CURPATH/include
prepend-path LD_LIBRARY_PATH $LIBDAPL_CURPATH/lib
append-path PE_PRODUCT_LIST LIBDAPL.$LIBDAPL_LVL.$LIBDAPL_SUBVER
#%Module######################################################################
#
# gcc4.9 modulefile 20160427
#
proc ModulesHelp { } {
puts stderr "This modulefile defines the library paths and"
puts stderr "include paths needed to use gcc4.9"
puts stderr "The program gcc4.9"
puts stderr "is added to PATH."
}
set is_module_rm [module-info mode remove]
set GCC_LEVEL 4.9
set GCC_SUBVER 3
set GCC_CURPATH /share/apps/bin/gcc
prepend-path PATH $GCC_CURPATH/gcc-$GCC_LEVEL.$GCC_SUBVER-bin/bin
prepend-path LD_LIBRARY_PATH $GCC_CURPATH/gcc-$GCC_LEVEL.$GCC_SUBVER-bin/lib64/:/usr/local/lib:/share/apps/lib/libmpc
prepend-path MANPATH $GCC_CURPATH/gcc-$GCC_LEVEL.$GCC_SUBVER-bin/share/man
append-path PE_PRODUCT_LIST GCC.$GCC_LEVEL
#%Module######################################################################
#
# gcc5.3 modulefile 20160427
#
proc ModulesHelp { } {
puts stderr "This modulefile defines the library paths and"
puts stderr "include paths needed to use gcc5.3"
puts stderr "The program gcc5.3"
puts stderr "is added to PATH."
}
set rel [uname release]
global prodlist
if { $rel == "2.6.32-504.16.2.el6.x86_64" } {
set prodlist {libc-2.14 libmpc2}
} else {
set prodlist {libmpc2}
}
set is_module_rm [module-info mode remove]
catch {set modulehomes $env(MODULEPATH)}
if { [ module-info mode load ] } {
foreach prod $prodlist {
foreach mfilehome [ split $modulehomes :] {
if { [file exists $mfilehome/$prod] } {
module load $prod
}
}
}
}
if { [ module-info mode remove ] } {
foreach prod $prodlist {
foreach mfilehome [ split $modulehomes :] {
if { [file exists $mfilehome/$prod] } {
module unload $prod
}
}
}
}
set GCC_LEVEL 5.3
set GCC_SUBVER 0
set GCC_CURPATH /share/apps/bin/gcc
prepend-path PATH $GCC_CURPATH/gcc-$GCC_LEVEL.$GCC_SUBVER-bin/bin
prepend-path LD_LIBRARY_PATH $GCC_CURPATH/gcc-$GCC_LEVEL.$GCC_SUBVER-bin/lib64/:/usr/local/lib:/share/apps/lib/libmpc
prepend-path MANPATH $GCC_CURPATH/gcc-$GCC_LEVEL.$GCC_SUBVER-bin/share/man
append-path PE_PRODUCT_LIST GCC.$GCC_LEVEL
#%Module######################################################################
#
# gcc5.4 modulefile 20160427
#
proc ModulesHelp { } {
puts stderr "This modulefile defines the library paths and"
puts stderr "include paths needed to use gcc5.4"
puts stderr "The program gcc5.4"
puts stderr "is added to PATH."
}
#global prodlist
#set prodlist {libc-2.14 libmpc2}
set is_module_rm [module-info mode remove]
#catch {set modulehomes $env(MODULEPATH)}
#if { [ module-info mode load ] } {
# foreach prod $prodlist {
# foreach mfilehome [ split $modulehomes :] {
# if { [file exists $mfilehome/$prod] } {
# module load $prod
# }
# }
# }
#}
#if { [ module-info mode remove ] } {
# foreach prod $prodlist {
# foreach mfilehome [ split $modulehomes :] {
# if { [file exists $mfilehome/$prod] } {
# module unload $prod
# }
# }
# }
#}
set GCC_LEVEL 5.4
set GCC_SUBVER 0
set GCC_CURPATH /share/apps/bin/gcc
prepend-path PATH $GCC_CURPATH/$GCC_LEVEL/bin
prepend-path LD_LIBRARY_PATH $GCC_CURPATH/$GCC_LEVEL/lib64/:$GCC_CURPATH/$GCC_LEVEL/lib:/usr/local/lib:/share/apps/lib/libmpc
prepend-path MANPATH $GCC_CURPATH/gcc/share/man
append-path PE_PRODUCT_LIST GCC.$GCC_LEVEL
#%Module######################################################################
#
# gcc7 modulefile 20200205
#
proc ModulesHelp { } {
puts stderr "This modulefile defines the library paths and"
puts stderr "include paths needed to use gcc7"
puts stderr "The program gcc7"
puts stderr "is added to PATH."
}
set rel [uname release]
global prodlist
#if { $rel == "2.6.32-504.16.2.el6.x86_64" } {
# set prodlist {libc-2.14 libmpc2}
#} else {
# set prodlist {libmpc2}
#}
set is_module_rm [module-info mode remove]
catch {set modulehomes $env(MODULEPATH)}
#if { [ module-info mode load ] } {
# foreach prod $prodlist {
# foreach mfilehome [ split $modulehomes :] {
# if { [file exists $mfilehome/$prod] } {
# module load $prod
# }
# }
# }
#}
#
#if { [ module-info mode remove ] } {
# foreach prod $prodlist {
# foreach mfilehome [ split $modulehomes :] {
# if { [file exists $mfilehome/$prod] } {
# module unload $prod
# }
# }
# }
#}
set GCC_LEVEL 7
set GCC_SUBVER 0
set GCC_CURPATH /usr/lib/gcc/x86_64-linux-gnu/
prepend-path PATH $GCC_CURPATH/$GCC_LEVEL
prepend-path LD_LIBRARY_PATH $GCC_CURPATH/$GCC_LEVEL
setenv CPLUS_INCLUDE_PATH $GCC_CURPATH/$GCC_LEVEL/include
setenv C_INCLUDE_PATH $GCC_CURPATH/$GCC_LEVEL/include
append-path PE_PRODUCT_LIST GCC.$GCC_LEVEL
#%Module######################################################################
#
# golang 1.11 20190320
#
proc ModulesHelp { } {
puts stderr "This modulefile defines the library paths and"
puts stderr "include paths needed to use Go (golang) version 1.11"
puts stderr "The program Go 1.11"
puts stderr "is added to PATH."
}
set is_module_rm [module-info mode remove]
unsetenv LD_LIBRARY_PATH
set GO_LEVEL 1.11
set GO_CURPATH /share/apps/bin/golang/$GO_LEVEL/go
prepend-path PATH $GO_CURPATH/bin/
prepend-path LD_LIBRARY_PATH $GO_CURPATH/lib/
prepend-path MANPATH $GO_CURPATH/share/man
setenv GOPATH ~/go
setenv GOROOT $GO_CURPATH
append-path PE_PRODUCT_LIST Golang.$GO_LEVEL
#%Module######################################################################
#
# golang 1.13 20190320
#