put stats output in outputdir

tools/FROGS_affiliation/FROGS_affiliation.rule.snakefile

@@ -15,7 +15,7 @@ rule <step_name>__FROGS_affiliation:
         taxfile = config["<step_name>__FROGS_affiliation_reference_fasta"]+"/train_set.fasta",
         yamlfile = config["<step_name>__FROGS_affiliation_reference_fasta"]+"/info.yaml",
         # taxonomic_ranks = "-t Domain Phylum Class Order Family Genus Species",
-        # rdp = "--rdp "+config["<step_name>__FROGS_affiliation_rdp"] if config["<step_name>__FROGS_affiliation_rdp"] else "",
+        #rdp = "--rdp "+config["<step_name>__FROGS_affiliation_rdp"] if config["<step_name>__FROGS_affiliation_rdp"] else "",
     threads: 
         config["<step_name>__FROGS_affiliation_threads"],
     shell: """
@@ -36,7 +36,7 @@ rule <step_name>__FROGS_affiliation:
         --nb-cpus {threads} \
         --java-mem 20;
         echo \"1\t./{params.stepDir}/affi_report.html\" > {params.outDir}/text.generic.tsv
-        {params.cmdStat} -i {output.abundance_file}  --tax-consensus-tag 'blast_taxonomy' --multiple-tag 'blast_affiliations' ;
+        {params.cmdStat} -i {output.abundance_file}  --tax-consensus-tag 'blast_taxonomy' --multiple-tag 'blast_affiliations' -o {params.outDir}/affiliations_stat.html ;
         echo \"2\t./{params.stepDir}/affiliations_stat.html\" >> {params.outDir}/text.generic.tsv
         """
         # {params.rdp} \