Commits · 72133f371919a686d41ac4aa8d6c47881c5cd338 · mbb / waw

16 May, 2022 1 commit
- Update Lulu in example WFs · 72133f37
  khalid authored May 16, 2022
  
  72133f37
13 May, 2022 5 commits
- change some functions names · a0c4c839
  khalid authored May 13, 2022
  
  a0c4c839
- less verbose download · bcad6fa2
  khalid authored May 13, 2022
  
  bcad6fa2
- Using frogs databases · c33b9280
  khalid authored May 13, 2022
  
  c33b9280
- force re-copy of data/files · c1993558
  khalid authored May 13, 2022
  
  c1993558
- dada2 taxonomy assignation now use frogs formated dbs · 8c6bc474
  khalid authored May 13, 2022
  
  8c6bc474
11 May, 2022 2 commits
- Put new WF in separate dirs · 53905977
  khalid authored May 11, 2022
  
  53905977
- Add lulu for post clustering curation · 12d034b9
  khalid authored May 11, 2022
  
  12d034b9
10 May, 2022 1 commit
- add a simple OTU abundance count output · 277d26f4
  khalid authored May 10, 2022
  
  277d26f4
09 May, 2022 1 commit
- Swich to cutadapt 4.0 · 5654f689
  khalid authored May 09, 2022
  
  5654f689
06 May, 2022 5 commits
- Add phyloseq stats · 203d588a
  khalid authored May 06, 2022
  
  203d588a
- Add post install command to FROGS dependencies · 0333b91e
  khalid authored May 06, 2022
  
  0333b91e
- change blast dir installation · f226e01c
  khalid authored May 06, 2022
  
  f226e01c
- Add RDPclassifier · 563546c1
  khalid authored May 06, 2022
  
  563546c1
- Add Frogs biom 2 tsv · 73a16a18
  khalid authored May 06, 2022
  
  73a16a18
05 May, 2022 14 commits
- put stats output in outputdir · be068df3
  khalid authored May 05, 2022
  
  be068df3
- put cluster stats output in outputdir · a7d8c416
  khalid authored May 05, 2022
  
  a7d8c416
- Append different html output · e5d78b66
  khalid authored May 05, 2022
  
  e5d78b66
- change varExp name · 7d3667f5
  khalid authored May 05, 2022
  
  7d3667f5
- change varExp name · 13b1a6c3
  khalid authored May 05, 2022
  
  13b1a6c3
- Add fasta as ouput · 2b6bf46f
  khalid authored May 05, 2022
  
  2b6bf46f
- Add diversity files as output · 889ec9c1
  khalid authored May 05, 2022
  
  889ec9c1
- Add a label to varExp param · fb7571f0
  khalid authored May 05, 2022
  
  fb7571f0
- typo in if · beec971f
  khalid authored May 05, 2022
  
  beec971f
- change command name · 8f393fa2
  khalid authored May 05, 2022
  
  8f393fa2
- Add html output to report · 708f85f8
  khalid authored May 05, 2022
  
  708f85f8
- Change tool name · 2a9865aa
  khalid authored May 05, 2022
  
  2a9865aa
- Add a bunch of phyloseq stats · bf33067f
  khalid authored May 05, 2022
  
  bf33067f
- just copy input fasta if in mask mode · b96eba60
  khalid authored May 05, 2022
  
  b96eba60
04 May, 2022 1 commit
- Add affiliations stats · b06eb584
  khalid authored May 04, 2022
  
  b06eb584
03 May, 2022 8 commits
- add a stat report · d89527b6
  khalid authored May 03, 2022
  
  d89527b6
- add a stat report · 97a5fc26
  khalid authored May 03, 2022
  
  97a5fc26
- Add mbb_mqc_plugin as dependencie · 67ca704f
  khalid authored May 03, 2022
  
  67ca704f
- swarm compo no longer a mqc file · ec2606d8
  khalid authored May 03, 2022
  
  ec2606d8
- Add a generic module to insert html reports in iframes · 1e97cd0c
  khalid authored May 03, 2022
  
  1e97cd0c
- Add a generic module to insert html reports in iframes · de65222d
  khalid authored May 03, 2022
  
  de65222d
- fasta output not mandatory in FROGS filter aff · 6458af7f
  khalid authored May 03, 2022
  
  6458af7f
- Add a generic module to insert html reports in iframes · acb4db52
  khalid authored May 03, 2022
  
  acb4db52
02 May, 2022 2 commits
- add _mqc to some filenames to be integrated by multiqc · 3d9de010
  khalid authored May 02, 2022
  
  3d9de010
- fasta output is not mandatory for filter affiliation · 5cc09c8a
  khalid authored May 02, 2022
  
  5cc09c8a